K25625

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K25625

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • desaturated green (PATO:0001272)
    (Cauline leaf::Color::pale)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • desaturated green (PATO:0001272)
    (Rosette leaf::Color::pale)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
T2  
cauline leaf (PO:0000013)
  • increased size (PATO:0000586)
    (Cauline leaf::Shape::large)
  • decreased width (PATO:0000599)
    (Cauline leaf::Shape::narrow)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
seed (PO:0009010)
  • low brightness (PATO:0000327)
    (Seed::Color::dark)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K25625

Determination of introduced cDNA(s)

  • J033037A09 - Rice Full-length cDNAs - Original: J033037A09

    full reading [+] show sequence

    Nucleotide sequence: J033037A09 - full reading
    GGCTTCTCCT CTCCCATCTC TCGCTTCGCT CCGCTTGCCT AGGGTTTCGC 
    CTCCCGCCGG CAGCCGCGCC CCCGCCGCCC TCGCCTCAGA TCCCGCCGCC
    GGCGACCCCC CCACGATCCT CCTCCCCCGC CGCCCGCCGA TCCCGTCGAG
    CTCCGGTTCG GTGTTTGCTC CCCTACTCCG CCGCCGCGAC GCCTCGGGCT
    TGCAGAGTCT GGGCGGGCGC CGCGGGGGGA GTGCAGATCT AGGGTTTGGG
    GGCTCTGGCT GGTGCATGAG AAGGGCACTG GAGTACGGAC GGCATGGAGG
    TGGAGGCGGC GAGGAGGGAC GCGGCCACGC TGGACCCGGA GCTGCTGCAG
    CTGCCGGAGC TCTCGCCTGG CGCGCTCCGG GAGAACCCCG CCCTTGCTGA
    GGCGCTCTAC TCGCAGTGGC TCGCGCTCCC CGAGACATCC AAGCTGGTGA
    ACTCTTTGAT TGAAGATGCA AAAGCTGGTG CTACATTGAA TGTTACTGGG
    AGCTCTGCTA GCACAAATGC TGCTTCAAGT GGTTCTTTGC CATCAATGTT
    TCCGGCTGGT AGTGCTCCTC CCCTTTCTCC TAGAAGCACT TCTGGCTCCC
    CCCGTGTTAT GAGGCGAGGA TCTGGAGCTG GACCATCATC CTTGGGATCT
    CCACTAAAAG TAGTTAGTGA ACCAGTGAGG GAGGTTATAC CCCAGTTTTA
    CTTCAAATAT GGGCGCCCTG CTCCAAAAGA TTTGAAGGAG CAATGCTTAT
    CTAGAATAGA TCACCTCTTT TTTGCAGGGG AGGGACTCCA GATTCAAGAA
    TTTAGATCAG TCACAAAAGA TATATGCAAA CTTCCATCGT TCTTCTCCAG
    TGTTCTTTTC AAGAAGATCG ATGCTGCAGG CTCTGGAACT GTCACAAGGG
    ATGCGTTTGT TGATTACTGG ATCAATGATA ACAAGATTAC AATGGACACA
    GCTAGCCAAA TCTTTGAAAT ATTAAGAAAG CCGGATTACA ATTATCTCAC
    TCAGGAGGAC TTTAAGCCTG TCTTAAAAGA ACTTCTGGCA ACTCACCCTG
    GATTAGAGTT CTTGCAAGGC ACCCCTGAGT TTCAGGAGAG ATATGCTGAG
    ACTGTAATAT ACAGAATCTT TTATTCCATA AATAGAGCTG GAAATGGCCA
    TCTTACCCTC AGAGAGCTAA AACGTGGGAA TTTAATTGCT GCGATGCAGC
    AGCTGGATGA GGAAGAGGAT ATCAATAAAG TGTTGAGATA CTTCTCATAC
    GAGCACTTTT ATGTGATATA CTGCAAATTT TGGGAGTTGG ACACAGATCA
    TGATTTTTTG ATTGATAAAG AGAACCTTAT CAGATATGGA AATCATTCAT
    TAACCTACCG AATCGTTGAT AGAATCTTCT CACAGGTCCC AAGAAAATTC
    ACAAGCATGA CAGAAGGAAA GATGGGTTAT GAAGATTTTG TTTACTTTAT
    TTTGTCTGAG GAAGACAAAT CATCCGAGCC TAGCCTTGAA TACTGGTTTA
    AGTGTATTGA CCTTGATGGA AATGGCATTT TAACCACCAC TGAAATGCAA
    TTTTTCTATG AGGAGCAATT GCACCGGATG GAGTGCATGG CACAAGAACC
    TGTGCTTTTT GAGGACATAT TATGCCAGAT GATTGATATG ATTGGACCAG
    AGAACGAGTG CTACTTTACA CTACGGGACT TAAAACGGTG TAAACTCTCA
    GGGAATATAT TCAACATCCT ATTCAATCTC AACAAATTTA TGGCATTTGA
    AACTCGTGAT CCATTCCTCA TTCGCCAGGA ACGTGAAAAT CCAACTTTAA
    CCGAGTGGGA TCGGTTCGCA CATAGAGAGT ATATTAGATT GTCCATGGAA
    GAAGATGGTG AAGATGCTTC AAATGGAAGT GGTGATGTGT GGGATGAATC
    GCTTGAAGCT CCATTTTGAA ATATCTCTTG CTGGCTGAAT CTTGTGGGAC
    ATGGATGGAA TTGGTTTGGA GGTCAAAGAA ATGTAAAGTT GTTCGCTAGC
    CTGTGGAGAC CATTGCAGGC TTGAGGAAGT TTCAGTAACA CCAAAGACTT
    CTTACAGGAT TTACTGTGCA GGTCTGATTC GATAGTATCG GTTGTCCAGT
    TGTGCAAAAC ATTTTTGCTT GGCAGGAGAA ACGAGGAAGT TGATGTGGGC
    GTCCTGCCTT GTCAAGGCAA CAACCTCAAC AGTCTCAAGT GATGCTATAG
    TGGGGGACCT TTCATGGTCA ACATGTTTCT GTGTTCTTAT TGGTGCTTTA
    GGGGGGGATG TCGGTTTATT CAATTGCTGT GCTCAAATTT TGGAGCTGAA
    CTGTTATTGT TTGGCTGCCA TTTTCTTTGT TATTTTGTGG AAGTGCGAGC
    AAGCAATTCC ATCATTAACT TTGATCATGG TATGTAGCTT TCTGGTTCTG
    CTTTCTGTTC AGTATGGTGT TTTGTAGCTG TTGCCGTCAC TGGGTACATT
    TTGGGAGGTA AGGTAAAAAG ACCTCAGGAT ATGGATATCT GTTGTCATTA
    CCCATTTGTA ACATTAACAA GAAACGGTGG ATGGGTGCAT AAGAAATTTA
    AATGAGGATG TAGGTTCCAT CATC

    Gene models with high sequence identity

    1. AT1G54450.1 [+] show detail - Calcium-binding EF-hand family protein
      E-value: 0; Score: 759.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan EF-HAND 2 6.201
    ProfileScan EF-HAND 2 5.475
    ProfileScan EF-HAND 2 9.66
    superfamily EF-hand 2.5e-23
    superfamily EF-hand 7.6e-16
    Gene3D EF-hand-like domain 5.9e-10
    PatternScan EF-Hand 1, calcium-binding site 0
    HMMPanther PHOSPHATASE 2A REGULATORY SUBUNIT-RELATED 1.9e-141

    See the detailed result >

    AT1G54450.1

    Model type
    Protein coding
    Short Description
    Calcium-binding EF-hand family protein
    Computational Description
    Calcium-binding EF-hand family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, 4 leaf senescence stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048); BEST Arabidopsis thaliana protein match is: Calcium-binding EF-hand family protein (TAIR:AT5G28850.2); Has 645 Blast hits to 642 proteins in 124 species: Archae - 0; Bacteria - 0; Metazoa - 309; Fungi - 0; Plants - 144; Viruses - 0; Other Eukaryotes - 192 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR