K25644

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K25644

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • increased width (PATO:0000600)
    (Seed::Shape::wide)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K25644

Determination of introduced cDNA(s)

  • J033103I16 - Rice Full-length cDNAs - Original: J033103I16

    full reading [+] show sequence

    Nucleotide sequence: J033103I16 - full reading
    GTTTCAGGAT CAGTAATTCT GTGCACTTGT CTGCAGGATG GCAAGGATTG 
    GATGACGCAG CTGCTAGCAG TAGCGTGCTT GTCGCTTGCT GCCAAGATGG
    AGGAAACCGA TGTGCCTCAA TCGCTGGACC TGCAGGTCGG GGAAGAACGG
    TACGTGTTCG AGGCGAAGAC GATCCAGAGG ATGGAGCTGC TGGTCCTGAG
    CACCCTCAAA TGGAGGATGC AGGCCGTCAC TCCCTTCTCC TACGTCGACT
    ACTTCCTCCG CGAGCTCAAC GGCGGCGATC CGCCGTCGGG ACGCTCGGCG
    CTGCTGTCTT CAGAGCTCAT CTTGTGCATA GCTAGAGGAA CAGAATGCTT
    GGGATTCAGG CCGTCGGAGA TCGCCGCCGC GGTCGCCGCC GCCGTGGTCG
    GAGAAGAACA CGCCGCTTTC TCCCATGTAA ATAAGGAGAG GATGTCGCAT
    TGCCAGGAAG TGATTCAGGC CATGGAGTTG ATACATCCAA AACCTTCAAG
    CCCCAGCAGA GTCTTCGTCT CCTCCTCCAT TCCACGGAGC CCTACTGGCG
    TGTTGGATGC AGCAGGCTGC CTCAGCTACA GGAGTGACGA TTCAGCTGTT
    GCCTCACACT ACGCAGCAAG CAGCTGGGGA TATGAACATG ATAGCTCCCC
    GGTTAGCAGC AAGAGGAGGA AGATTAGCAG ATGATGCAGC CAATGATGGA
    TCAATTAAAA GTCTGTTTAT ATGTGTTGCG AAACTGATCG TGCATCTCTC
    TTTCTTGGGA AAGTCAAATG GTTTTGATTG CAAATGACTG TGGAGCCTTT
    CGATGCCGTA TGGGAGCTAG AGCCTGAAAG GCGATGAAGG ACCAAAAGCA
    AGGCATTTTC GACATGGCAA CAGAGCAAAG ATACTGATGG ATAAAGAGAG
    TCTGAGGTAG ACATGTGCTC CAATATTTTC ATGTGCTTTA GCGTTAGTTG
    CTAGGAGGCA GGCAGCCACA AAAGAGTAGA GGATTTGTGG GAAGAGAGCC
    GGGCGAGATG AAAATGAGAT GACCAAAATA AAGGCAGAGA CGAGGTGACA
    GTGGCACAAG GCAAAGCGAG CTAGGCACTG ACACTCCAGA TGTCCTGCGT
    GTGTTTCAGT TTTGCGTTGT TCTGTAATTT CCCCTGCTTA ATTCCTTTGT
    GAAGAAAAAT CATAAAAAAG GAG

    Gene models with high sequence identity

    1. AT5G65420.3 [+] show detail - CYCLIN D4;1
      E-value: 2e-29; Score: 126.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Cyclin-related 0.00000000012
    HMMPfam Cyclin, N-terminal 1.4e-16
    HMMPfam Cyclin, C-terminal 0.00000082
    HMMPanther Cyclin D 5.4e-50
    HMMPanther CYCLINS 5.4e-50
    superfamily Cyclin-like 2.8e-17

    See the detailed result >

    AT5G65420.3

    Model type
    Protein coding
    Short Description
    CYCLIN D4;1
    Curator Summary
    Encodes a D-type cyclin CYCD4;1 that physically interacts with CDC2A and is expressed during vascular tissue development, embryogenesis, and formation of lateral root primordia. Its expression is upregulated early during germination.Involved in stomatal cell lineage proliferation in the hypocotyl.
    Computational Description
    CYCLIN D4;1 (CYCD4;1); FUNCTIONS IN: cyclin-dependent protein kinase regulator activity; INVOLVED IN: G1 phase of mitotic cell cycle, regulation of cell cycle, response to sucrose stimulus, stomatal lineage progression; LOCATED IN: nucleus; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin, C-terminal (InterPro:IPR004367), Cyclin D (InterPro:IPR015451), Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Cyclin, N-terminal (InterPro:IPR006671), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: cyclin d4;2 (TAIR:AT5G10440.1).
    Link
    InterPro Scan - TAIR