K25644

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K25644

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased width (PATO:0000600)
    (Seed::Shape::wide)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K25644

Determination of introduced cDNA(s)

  • J033103I16 - Rice Full-length cDNAs - Original: J033103I16

    full reading [+] show sequence

    Nucleotide sequence: J033103I16 - full reading 
    GTTTCAGGAT CAGTAATTCT GTGCACTTGT CTGCAGGATG GCAAGGATTG 
    GATGACGCAG CTGCTAGCAG TAGCGTGCTT GTCGCTTGCT GCCAAGATGG 
    AGGAAACCGA TGTGCCTCAA TCGCTGGACC TGCAGGTCGG GGAAGAACGG 
    TACGTGTTCG AGGCGAAGAC GATCCAGAGG ATGGAGCTGC TGGTCCTGAG 
    CACCCTCAAA TGGAGGATGC AGGCCGTCAC TCCCTTCTCC TACGTCGACT 
    ACTTCCTCCG CGAGCTCAAC GGCGGCGATC CGCCGTCGGG ACGCTCGGCG 
    CTGCTGTCTT CAGAGCTCAT CTTGTGCATA GCTAGAGGAA CAGAATGCTT 
    GGGATTCAGG CCGTCGGAGA TCGCCGCCGC GGTCGCCGCC GCCGTGGTCG 
    GAGAAGAACA CGCCGCTTTC TCCCATGTAA ATAAGGAGAG GATGTCGCAT 
    TGCCAGGAAG TGATTCAGGC CATGGAGTTG ATACATCCAA AACCTTCAAG 
    CCCCAGCAGA GTCTTCGTCT CCTCCTCCAT TCCACGGAGC CCTACTGGCG 
    TGTTGGATGC AGCAGGCTGC CTCAGCTACA GGAGTGACGA TTCAGCTGTT 
    GCCTCACACT ACGCAGCAAG CAGCTGGGGA TATGAACATG ATAGCTCCCC 
    GGTTAGCAGC AAGAGGAGGA AGATTAGCAG ATGATGCAGC CAATGATGGA 
    TCAATTAAAA GTCTGTTTAT ATGTGTTGCG AAACTGATCG TGCATCTCTC 
    TTTCTTGGGA AAGTCAAATG GTTTTGATTG CAAATGACTG TGGAGCCTTT 
    CGATGCCGTA TGGGAGCTAG AGCCTGAAAG GCGATGAAGG ACCAAAAGCA 
    AGGCATTTTC GACATGGCAA CAGAGCAAAG ATACTGATGG ATAAAGAGAG 
    TCTGAGGTAG ACATGTGCTC CAATATTTTC ATGTGCTTTA GCGTTAGTTG 
    CTAGGAGGCA GGCAGCCACA AAAGAGTAGA GGATTTGTGG GAAGAGAGCC 
    GGGCGAGATG AAAATGAGAT GACCAAAATA AAGGCAGAGA CGAGGTGACA 
    GTGGCACAAG GCAAAGCGAG CTAGGCACTG ACACTCCAGA TGTCCTGCGT 
    GTGTTTCAGT TTTGCGTTGT TCTGTAATTT CCCCTGCTTA ATTCCTTTGT 
    GAAGAAAAAT CATAAAAAAG GAG

    Gene models with high sequence identity

    1. AT5G65420.3 [+] show detail - CYCLIN D4;1
      E-value: 2e-29; Score: 126.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Cyclin-related 1.2e-10
    HMMPfam Cyclin, N-terminal 1.4e-16
    HMMPfam Cyclin, C-terminal 8.2e-07
    HMMPanther Cyclin D 5.4e-50
    HMMPanther CYCLINS 5.4e-50
    superfamily Cyclin-like 2.8e-17

    See the detailed result >

    AT5G65420.3

    Model type
    Protein coding
    Short Description
    CYCLIN D4;1
    Curator Summary
    Encodes a D-type cyclin CYCD4;1 that physically interacts with CDC2A and is expressed during vascular tissue development, embryogenesis, and formation of lateral root primordia. Its expression is upregulated early during germination.Involved in stomatal cell lineage proliferation in the hypocotyl.
    Computational Description
    CYCLIN D4;1 (CYCD4;1); FUNCTIONS IN: cyclin-dependent protein kinase regulator activity; INVOLVED IN: G1 phase of mitotic cell cycle, regulation of cell cycle, response to sucrose stimulus, stomatal lineage progression; LOCATED IN: nucleus; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin, C-terminal (InterPro:IPR004367), Cyclin D (InterPro:IPR015451), Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Cyclin, N-terminal (InterPro:IPR006671), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: cyclin d4;2 (TAIR:AT5G10440.1).
    Link
    InterPro Scan - TAIR