K25647

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K25647

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K25647

Determination of introduced cDNA(s)

  • J023065M10 - Rice Full-length cDNAs - Original: J023065M10

    full reading [+] show sequence

    Nucleotide sequence: J023065M10 - full reading 
    GACCGTTCTC CTTCGCGCCG CCACTCTCTC CGAGCTCTCG CCTCTCCTCC 
    TCCCCCGTCT TCCCTTCGCG CGCGCCACCC CCACACACGC GACCATGGCG 
    GCAGTGGCAG GAGGCGCAGC GCGGGCGCTG TCGCAGGCGG AGCAGGACGT 
    GCAGATGATG CTCGCCGCCG ACGTCCACCT CGGCACCAAG AACTGCGACT 
    TCCAGATGGA GCGCTACGTC TACAAGCGCC GCTCCGATGG TATCTACATC 
    ATCAACCTCG GCAAGACATG GGAGAAGCTG CAGCTCGCGG CGAGGGTGAT 
    TGTTGCCATT GAGAACCCCC AGGACATCAT TGTCCAGTCG GCCCGCCCCT 
    ACGGCCAGCG CGCCGTCCTC AAGTTCGCGC AGTACACTGG CGCGCACGCC 
    ATTGCTGGAA GGCATACGCC TGGTACATTT ACCAATCAGC TCCAGACCTC 
    CTTCAGCGAG CCCCGTCTGC TCATCCTCAC TGACCCAAGG ACCGATCACC 
    AGCCAATCAA GGAGTCTGCT CTGGGAAACA TCCCGACCAT TGCCTTCTGT 
    GACACCGATT CCCCAATGCG GTATGTCGAT ATCGGCATCC CGGCCAACAA 
    CAAGGGGAGG AACAGCATTG GGTGCCTGTT CTGGCTCTTG GCTAGGATGG 
    TTCTGCAGAT GAGGGGTACT ATCCTCCCTG GCCACAAGTG GGATGTTATG 
    GTTGATCTGT TTTTCTACAG AGACCCTGAG GAGGCCAAGG AGCAGGAGGA 
    GGAAGCTCCA GCACAAGACT TTGCTGCCAT CACTGATTAC ACCGCACCTG 
    AACAATGGTC TGCTGACCAG TGGACCTCTG ATGTGGCTGC TCCCCCAGCT 
    GCTACTGTTG GTGATTGGGG CGCAGCTCCA GCTCCAGTTG CTGCTGCCGA 
    AGGATGGGAT CAAGCAGGAG CACCCGTAGC CACTGAAGCC GCCGTCGTTC 
    CACCGGTTGC GCCTACTGGA TGGGACCCGG CAGCTCAACC AGCTGCTCAA 
    GGCTGGGATT AGGCTAGGCA ATCACTTTGA GATGTCTTCC GCAGCTTAAG 
    TTAAATATTT CCCGAGGCAT GAATGAACAC CCAAAATCCA ATGTGATCAT 
    CTATAGCTAC ACCATGAACT CAACTGTTTT TAGGAATTTC TAGCTGAACC 
    TGTGTTGTTT GTCCGTCCCT ATTTCGAACA ACAATGCTGT GAGGGTGAGC 
    TCGGCAAGAT GTGTGGTATA TGTTAAGCTT TCTACTTTTG TCCTAAGTTT 
    ATTCTGTAGC GTTTATATCA ATCTTTTCCT CGGTGCAATG GCATGGTTCT 
    ATACGCTCAG TTTGTTATTC

    Gene models with high sequence identity

    1. AT1G72370.1 [+] show detail - 40s ribosomal protein SA
      E-value: 2e-101; Score: 366.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMTigr Ribosomal protein S2, eukaryotic/archaeal 8.5e-144
    HMMPanther 40S RIBOSOMAL PROTEIN SA (P40) 3e-191
    HMMPanther Ribosomal protein S2, eukaryotic/archaeal 3e-191
    superfamily Ribosomal protein S2 3.6e-72
    PatternScan Ribosomal protein S2, conserved site 0
    FPrintScan Ribosomal protein S2 4.3e-31
    FPrintScan Ribosomal protein S2 4.3e-31
    FPrintScan Ribosomal protein S2 4.3e-31
    FPrintScan Ribosomal protein S2 4.3e-31
    FPrintScan Ribosomal protein S2 4.3e-31
    FPrintScan Ribosomal protein S2 4.3e-31
    HMMPfam Ribosomal protein S2 4e-40

    See the detailed result >

    AT1G72370.1

    Model type
    Protein coding
    Short Description
    40s ribosomal protein SA
    Curator Summary
    acidic protein associated to 40S ribosomal subunit of ribosomes. Involved in polysome formation during active protein synthesis. Expressed in actively growing tissue.
    Computational Description
    40s ribosomal protein SA (P40); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: response to salt stress, mature ribosome assembly, translation, response to osmotic stress; LOCATED IN: in 8 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S2 (InterPro:IPR001865), Ribosomal protein S2, conserved site (InterPro:IPR018130), Ribosomal protein S2, eukaryotic/archaeal (InterPro:IPR005707); BEST Arabidopsis thaliana protein match is: 40s ribosomal protein SA B (TAIR:AT3G04770.2); Has 3789 Blast hits to 3785 proteins in 1365 species: Archae - 262; Bacteria - 1853; Metazoa - 688; Fungi - 331; Plants - 191; Viruses - 0; Other Eukaryotes - 464 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR