K25650

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K25650

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K25650

Determination of introduced cDNA(s)

J023064J03 - Rice Full-length cDNAs - Original: J023064J03

full reading [+] show sequence

GTTTTTTCAA CAATCCTCAA CCTTCGGAGG CTAGTTTGGC AGAAGAATCA 
ATTTCTACAA ATGGTCAACA GATCGAGCAG GAAATGCCTG TAAATGTTGA 
ACCATCAGAT CTATCAGTTG ACAAAAGTAT TCAACATGCA CTGGTAGTTG 
GTGATTATAA AGGAGCAGTC AATCTGTGCC TTGCTGCCAA TCGAATGGCT 
GATGCTCTGG TTATTGCCCA TGCTGGTGGT TCTGCTCTAT GGGAAAGCAC 
AAGAAACCAG TATCTTAAGA ATACTGTATC ACCCTATCTA AAGGTTGTTT 
CTGCTATGGT TGGCAATGAT TTGATGAGTT TTGTGAGTAC ATGGCCATTG 
AATGCTTGGA AGGAAACACT TGCGCTACTG TGCACATTTG CCAGGAAAGA 
GGAATGGAAT GTTCTATGCG ATACCCTTGC ATCTAGACTG TTGGGAGTTG 
GAGATACACT AGCTGCGACT CTCTGTTATA TTTGTGCTGG AAATATCGAC 
AAAGCTGTGG AAATATGGTC TCGCGACTTG AAGTCTGAAG ATGGTGGGAA 
GACTTATGTT GATCTTCTCC AGGATTTGAT GGAGAAGACC ATTACTCTTG 
CCCTTGCTAC AGGGCATAAG AGCTTTAGCG CGTCACTGTC TAAGCTTGTG 
GAAAACTATG CAGAACTTTT GGCCAGTCAA GGCCTTCTTA AAACTGCAAT 
GGAATACTTA AAATTGTTGG GATCAGATGA ACATTCACAC GAGCTGGCAA 
TATTGAGAGA CCGGATTGCA TTTTCTACAG AAGAGAATCA TGCTGCCAGT 
ACTTCAGTTC ATGCGGGCAG TATTAACAGT TCCGCGTACC CTACAATTCA 
ACCGAGCTAT AGCACCCCAG ACCCTTCTCA GAACCTTTAC CAGGGGACTT 
CACAATATGC TGTGCCAAGT AACCAGTATC AAGATTACCA GCAACAATCT 
AATACAGCAT ATGGAACATA CAACAGTACA TATTCTCAAC AACCAACCCA 
GATGTTTGTT CCATCAAACA CCACTCCAGT GATCTCCCAG CCAAATGCAA 
CTCCAGCACC AGTTCCACAA CAACCAGTGA AGGCATTTAC TCCTACCAAC 
TTGCCAGGTC TAAAAAATCC TGAGCAATAC CAGCAACCAA CTTTGGGCTC 
CCAGCTTTAT GCGGGTGCTA ATCCACCATA TACTTCTGGA CAATCGACTC 
CATATCAAGG TGTACCTCCC ACCACATACC ATCAGCCTAG ACCACCTACA 
CAATTCCAAA CAGTTCCCAC AGCACCTCCA GCTGTTTCTA GTGCCACTGT 
ACCAGGAACG ACCCCAAGTC AGATGTTCCC TGGTCCAGTT GCTAATAACC 
CGACTTCCAG GTTTATGCCA TCAAACAATC CAGGTTTTGT TCAAAGGCCA 
GGTTTGAGTC CTGTACAGCC CTCAAGTCCA ACACAGGCAC AAGGACAACC 
GCAGCCTGTT GTTGCACCTC CTGCACCTCC CGCAACTGTG CAGACAGCTG 
ACACATCGAA GGTGTCTGCT GAGTTGAAAC CAGTTATTGC TACATTGACT 
AGACTATTTG ATGAAACATC TAAAGCTATG GGTGGATCAC AAGTTAAAAA 
ACGTGAAATC GAAGACAACT CAAGAAAGAT CGGAACACTA TTTGCAAAAC 
TCAATTCTGG GGATATATCT CCAAACGTTT CATCAAAACT CATTCAGCTT 
TGCAGTGCAC TTGATAGCGG TGATTTTGCC ACTGCGATGC ACCTTCAGGT 
ACTTCTGACA ACGAGCGACT GGGACGAGTG CAACTTCTGG CTTGCCGCAT 
TGAAGCGTAT GATCAAGACG AGGCAGAATT TCAGAATGTA AACGAGTGCC 
GCGTTTTGCA GCTAGTTCTG TATACACACA CCTTTTCGAC TTCTTACAAA 
AGTTGTTAGT GTTAGCAACT TATGAGGGTT TGTCTGCACA GTAGTGCTAT 
CTTGCTTCTT GTGTTCCCTC CTGCCAATTA TACTGAAGCT TGTCGCTTAA 
AAGTGGTCTG TTGTCTGGGC GATTACTTTT TGATAGTTCT TCGACATTCC 
TTTGTGAGGA TCAGTTCTTG GGTGATGGTG GTTGGATTTC ACGAGGATTA 
CTTGTAAGTG GGCATCTAGT TGTTATAGCT GGCCCATTTT GTTTTACCTT 
ATAAGTTAGA TTTTACCTGT TTGGACATTG GAAGTACTCT CGATAATTAA 
TACAAGGATA TTGGCTTGTT TATTGC

Gene models with high sequence identity

AT3G63460.3 [+] show detail - transducin family protein / WD-40 repeat family protein
E-value: 8e-142; Score: 501.00

InterPro Scan Digest

Program	Description	E-value
HMMPanther	SEC31	4e-208
HMMPanther	SEC31-RELATED PROTEIN	4e-208
HMMPfam	SRA1	2e-07

See the detailed result >

AT3G63460.3

Model type: Protein coding
Short Description: transducin family protein / WD-40 repeat family protein
Computational Description: transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT1G18830.1).
Link: InterPro Scan - TAIR