K25710

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K25710

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased width (PATO:0000600)
    (Seed::Shape::wide)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K25710

Determination of introduced cDNA(s)

  • J033117B06 - Rice Full-length cDNAs - Original: J033117B06

    full reading [+] show sequence

    Nucleotide sequence: J033117B06 - full reading 
    GAATTCTTTA ATCCCTCCCA CCCAGCGGAC GCGAGACGCC TCTGCTCTGC 
    TCTCTTGCTT GGAGTTTGGA GAGATCGAGA GAAAGGAGAA GGATACAGCT 
    TTTGGAGGAA AAACAACGGA TCGAAATCCC TCCCATTAGG GGCTTTGGGA 
    TTAAAATAGC GGTAACACAC ACACAAAAGG GATGCTCAGT TGGAATAATA 
    GCTGGCATTC AAGTTCAACA GAAAATAGAA CAATGGAGAG GGAAATTGTG 
    GCCTCATATG AACCCAAGAA GAATAACGAA ATCAGGATGT TTGAGAGTTC 
    AGACGAGATG GCAACAGATC TGGCTGAGTA TATTTCACAA GTTTCAGAAA 
    TTTCTATTAA GGAAAGAGGT TACTTTGCTA TTGCCCTGTC TGGAGGGCCT 
    CTTATCAGTT TTATGCGGAA ACTTTGTGAA GCACCATACA ACAAAACCCT 
    GGATTGGTCT AAATGGTACA TCTTCTGGGC TGATGAACGT GCGGTGGCTA 
    AGAACCATGT GGATAGCTAC TATAAATCAA CAAAAGAAGA TTTTCTCTCC 
    AAGGTGCCTA TTCTTAATGG TCACGTCTAC TCCATCAATG ACAATGTGAC 
    GGTGGAGGAT GCAGCGACGG ACTACGAATT CGTCATCCGT CAGCTGGTCA 
    AGATTCGCAC AGTCGGAGTT TCAGAGAGCA ACGACTGCCC CAAGTTTGAT 
    CTGATCCTCC TTAGCATCGG CTCTGATGGT CATGTAGCCT CATTGTTCCC 
    CAACCATCCT GCACTTGAGC TCAAGGACGA CTGGGTCACC TACATCACCG 
    ACTCTCCGGT GCCGCCACCG GAGAGGATCA CCTTCACCCT TCCCGTGATA 
    AACTCGGCAT CGAACATCGC CGTAGTGGCC ACCGGAGAAG ACAAGGCAAA 
    GGCTGTGTAT TTTGCCATCT CTGACGGTAC AGAGGGTCCT GATGCTCCAT 
    CAATTCCTGC AAGAATGGTT CAGCCAACGG ACGGTAAGTT GGTTTGGTTT 
    TTGGACAAGG CGAGTGCCTC GTTTCTTGAG GCCAAGACCA AGAACGATGG 
    GTATGAGCAT CCAAAGTATT AGCGACTTGG CATTCCCTTT TTGCTGCCTA 
    TGAAGAGTTG AGTTGATCAT GTAGTAGTTG ATGGTTTTTG ATGGAAGATG 
    CTTTCCTCCA TTACCTTGGT AGTAAGCAGT TCAGGTGCTC GTTTTGAAGG 
    TACTTGGATC TGAGAATATG AAAATATCCG TGTCTTTTTG GAGTTGACCA 
    TGGCGCATGG GTAATAGAGA TGTAATCTGT ACTTTATTTT GAGAACTCAC 
    AGAAGTTACT GAGAGTAGCT AAGTTCAAAT ATTGGCCGAA TATGTTAGC

    Gene models with high sequence identity

    1. AT1G13700.1 [+] show detail - 6-phosphogluconolactonase 1
      E-value: 4e-91; Score: 332.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther 6-phosphogluconolactonase 7.1e-79
    HMMTigr 6-phosphogluconolactonase 7.5e-62
    Gene3D no description 1.5e-55
    superfamily NagB/RpiA/CoA transferase-like 1.4e-64

    See the detailed result >

    AT1G13700.1

    Model type
    Protein coding
    Short Description
    6-phosphogluconolactonase 1
    Computational Description
    6-phosphogluconolactonase 1 (PGL1); FUNCTIONS IN: 6-phosphogluconolactonase activity, catalytic activity; INVOLVED IN: pentose-phosphate shunt, carbohydrate metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: 6-phosphogluconolactonase, DevB-type (InterPro:IPR005900); BEST Arabidopsis thaliana protein match is: NagB/RpiA/CoA transferase-like superfamily protein (TAIR:AT5G24400.1); Has 3744 Blast hits to 3744 proteins in 1410 species: Archae - 0; Bacteria - 2521; Metazoa - 189; Fungi - 243; Plants - 155; Viruses - 0; Other Eukaryotes - 636 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR