K25717

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K25717

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased width (PATO:0000600)
    (Seed::Shape::wide)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K25717

Determination of introduced cDNA(s)

  • J033025A18 - Rice Full-length cDNAs - Original: J033025A18

    full reading [+] show sequence

    Nucleotide sequence: J033025A18 - full reading 
    GGCTGAGAAA GCCAGGCAGG AGGAGGCGCA GCAGCACTAG CCGCGGTATA 
    AAACATCCAA GCGCTCCTCC ATCGTCGCCA CCGCTCCGGT TTGCCTCCCG 
    CGCGAGCCCT CGTCGACGCC GCCGGTATAT TGCTGAAGGA AGAAGAGCAC 
    CAACCTATTT ATCATGTCAG GAGGATCTTC ACCAAGGTCA AGACGAAGCA 
    GCTTTAATTC TTTATCAAGA GATCTCGAAC TCCCTTCAGA GCAAGGTTGT 
    CTCTCTGTTA TTGTCCTCGG GGCTTCTGGA GACCTAGCCA AGAAGAAAAC 
    TTTCCCGGCA CTCTTCCATC TTTTTGCACA GGGATTTATA CAATCAGGTG 
    AAGTGCATAT ATTTGGGTAT GCGAGATCAA ACCTTTCTGA TGATGGGTTA 
    AGGGAACGCA TTCGTGGATA CCTCAAAGGA GCCTCAGAAG AACATCTCTC 
    AGACTTTTTG CAACATATAA AATATGTCAG TGGTTCCTAT GACAGCGGAG 
    AAGGATTTGA GAAATTGAAC AAGGAAATTT CAGAGTATGA GAAGTCAAAC 
    AAATCAGAAA GCCCTCGCAG GCTCTTCTAT TTGGCATTGC CTCCATCTGT 
    CTACCCTTCA GTCTGCAAAA TGATCAGAAC ATATTGCATG AATCCATCTG 
    GATGGACTAG AGTCATTGTT GAGAAGCCAT TTGGAAAGGA CTTGGACTCT 
    GCAGAAGAAT TAAGTGCCCA ACTTGGGGAG CTATTTGACG AAAACCAACT 
    CTACAGAATT GATCACTACT TGGGAAAAGA GTTGGTCCAA AACCTGCTTG 
    TGCTTCGTTT TGCCAACCGC TTGTTCTTGC CTCTTTGGAA CCGTGACAAT 
    ATTGATAATA TACAGATTGT ATTCAGGGAG GACTTTGGGA CTGACGGGCG 
    TGGTGGATAT TTTGATCAAT ATGGAATCAT TCGTGACATC ATCCAGAACC 
    ATTTGTTACA GGTTTTCTGT TTGGTTGCAA TGGAAAAGCC TGTCTCTCTT 
    AAGCCTGAGC ACATTAGAGA TGAGAAAGTC AAGGTTCTGC AGTCCGTGAA 
    CCCTATAAAG CATGATGAGG TTGTCCTTGG ACAATACGAG GGGTACAAGG 
    ATGACCCTAC AGTGCCAGAT GACTCAAACA CCCCAACTTT TGCATCTGTC 
    GTGCTTCGGG TACACAATGA AAGATGGGAG GGTGTTCCTT TCATTCTTAA 
    AGCTGGTAAA GCACTAAGCT CAAGGAAAGC AGAAGTCCGT GTGCAGTTCA 
    AAGATGTTCC TGGTGACATC TTTAAATGTA AAAGGCAAGG AAGAAATGAG 
    TTTGTCATAC GCCTTCAGCC ATCAGAAGCC ATGTACATGA AACTTACTGT 
    CAAAAAACCT GGATTGGAGA TGGCCACCGA GCAGAGTGAA CTTGATCTGT 
    CATACGGGAT GCGGTACCAA AACGTCAAAA TTCCAGAGGC ATACGAGCGT 
    CTCATATTGG ATACGATACG AGGAGACCAA CAGCACTTCG TTCGCCGAGA 
    TGAGCTGAAG GCTGCTTGGC AGATCTTCAC TCCCCTGCTG CACGACATCG 
    ACGAAGGCAA GGTGAAGTCT ATTCCATACC AGCCTGGCAG CCGAGGCCCC 
    AAGGAAGCCG ATGAACTGAG CGAGAGGGTT GGGTATATGC AGACCCACGG 
    TTACATATGG ATACCACCCA CCCTTGCATA GACAGACAGA CAGACAGACA 
    GTAGTATTGT TTAGCTAGGA AGAGTGCCTC TAAACTGTTA TTATTGCGGA 
    TATATTCGTT TCATATTTTC ACGATAACGC CTGACTAGTG ACTACCTGGC 
    GTTGTAATAA TGTGTTGCTT CGTAAGTATA ACTGCTATTT TGAAATAAAA 
    GTGCATGTTT CGACC

    Gene models with high sequence identity

    1. AT5G40760.1 [+] show detail - glucose-6-phosphate dehydrogenase 6
      E-value: 0; Score: 801.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D NAD(P)-binding domain 2.2e-49
    Gene3D no description 1.9e-115
    superfamily Glyceraldehyde-3-phosphate dehydrogenase-like 4e-141
    superfamily NAD(P)-binding domain 8.1e-71
    PatternScan Glucose-6-phosphate dehydrogenase, active site 0
    HMMPIR Glucose-6-phosphate dehydrogenase 1.7e-212
    HMMPfam Glucose-6-phosphate dehydrogenase 1.7e-129
    HMMPfam Glucose-6-phosphate dehydrogenase 1.1e-62
    HMMPanther Glucose-6-phosphate dehydrogenase 2.2e-230
    HMMTigr Glucose-6-phosphate dehydrogenase 5.1e-237
    FPrintScan Glucose-6-phosphate dehydrogenase 2.2e-55
    FPrintScan Glucose-6-phosphate dehydrogenase 2.2e-55
    FPrintScan Glucose-6-phosphate dehydrogenase 2.2e-55
    FPrintScan Glucose-6-phosphate dehydrogenase 2.2e-55
    FPrintScan Glucose-6-phosphate dehydrogenase 2.2e-55

    See the detailed result >

    AT5G40760.1

    Model type
    Protein coding
    Short Description
    glucose-6-phosphate dehydrogenase 6
    Curator Summary
    Encodes a cytosolic glucose-6-phosphate dehydrogenase that is insensitive to reduction by DTT and whose mRNA is expressed ubiquitously.
    Computational Description
    glucose-6-phosphate dehydrogenase 6 (G6PD6); CONTAINS InterPro DOMAIN/s: Glucose-6-phosphate dehydrogenase, C-terminal (InterPro:IPR022675), Glucose-6-phosphate dehydrogenase, active site (InterPro:IPR019796), NAD(P)-binding domain (InterPro:IPR016040), Glucose-6-phosphate dehydrogenase (InterPro:IPR001282), Glucose-6-phosphate dehydrogenase, NAD-binding (InterPro:IPR022674); BEST Arabidopsis thaliana protein match is: glucose-6-phosphate dehydrogenase 5 (TAIR:AT3G27300.3); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR