K25724

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K25724

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K25724

Determination of introduced cDNA(s)

  • J023038D03 - Rice Full-length cDNAs - Original: J023038D03

    full reading [+] show sequence

    Nucleotide sequence: J023038D03 - full reading 
    GGGAGCTCGA GCGTGGCGGC GGAAGCGCGG CGAGGTTCAG CAGCGGGGAT 
    CGGGGAGGCG AGCCGGCCGG CAGAAGTGCG GAGGCGGAGC ACAGCGAGGA 
    GGGAGACGAA CTGGTTGGCC ACTTTGCCTC AACCATATAC AAAAATAGTG 
    TTTCACCGGA TGTTCATCTT GCTGCTCTTT TTTTCCCTCA AAACTGTTCG 
    TAGATCGACC AGGAATTCGC GATGGTTGCG CTCTCCAAGT TAGTGCTGAT 
    CACTGCAGTG GCGCTGCTGG GCTGGGCGTA CAAGGTCGCG CGGCCGCCGC 
    CGCCGCCGAT CTTGGGCGGT CCGGGAGGGC CACCGGTCTC CTCTCCGAGA 
    GTCCAGCTCA AGGACGGCCG GCACCTGGCC TACAGGGAAG CCGGGGTCGG 
    CAGGGAGATC GCCAAGTACA AGATCATTTT CTCCCATGGC TTCGCCTCCA 
    CCAAGGAATC CGACTTCCCG GTGTCCCAAG AGCTGGCAGA GGAGCTGGGG 
    ATTTACCTGC TGTACTTCGA CAGGGCTGGG TATGGCGACA GCGACGCCAA 
    CCCGAAGCGG GGGCTGAAGA GCGACGCCAC GGACGTCGAG GAGCTCGCCG 
    ACAAGCTGCA GCTCGGGGAG AAGTTCTATG TGGTTGGGAC TTCCATGGGC 
    GGCTACGTTG CGTGGAGCTG CCTCAACTAC ATCCCTTACA GGCTGGCCGG 
    CGTGGCGCTG GTCGTGCCGG CGGTGAACTA CTGGTGGCCG ATGCCCGCCA 
    GTGTGTCGGC CAGTGCGTAC CGCAAGCTGG ACGTCGGGGA CCGGAGGACG 
    TTCTGGATCG CGCACCACAT GCCTTGGCTG TTCTACGCCT GGTTCAATCA 
    AAAGTGGTTC AGGATCTCAC CGATCGTGGA GGGGAAGCCC GAGGCTTTCA 
    CTGAAAAGGA CTGGGAGATC CTAGCTGAGA TTCAGAGAAC TGGCCAATTG 
    GACAGGGGGA GGGCGACGAA GCAGGGAGCC TACCACTCGC TGTGCCGCGA 
    CGCGACGATC CTGTTCGGGG CGTGGGAGTT CGACCCGACG GCGATCGAGA 
    ACCCGTTCCC CAACGGGGAC GGCGTCGTCA GCATCTGGCA AGGGCGCGAG 
    GACAAGATCG TGCGGGTGGA GGCGCAGCGC TACGTGGCGG AGAAGCTCCC 
    GTGGGTACGG TACCACGAGC ACCCCGAGGG CGGCCACCTC TTCATGTGCG 
    CCGACGGGTT GGGCGACAAG ATCGTCCGGG AGCTCCTGCT CGGCGAGGAG 
    CCGCGAGATT TGTAGACAGA TCGAGTTCGT GTCCTGTTTC GCTACACAGA 
    GAGGGGAACA CAAACTCACA GATTGGGGAG GAATATAGGT CCAAGCGGTG 
    CTTGTAGTTG TTGATGGAAT AAACCTCCGA TTTGCTAAAC TAGAAAATCG 
    AACTTAAAAT CCTGTGAATT TCTAACTTCT GATATGCACC GCAGTCTGTG 
    CTCCGATCAG GCTAGTGTTG AATATATAGA TTGTGTTTTC TTTTCCGCGT 
    AGGTGAATTA AAGACTGTTC ATTCACAACC GTTCATACAA AACAATAAAT 
    CGGCATAATT AAATTCG

    Gene models with high sequence identity

    1. AT3G48410.1 [+] show detail - alpha/beta-Hydrolases superfamily protein
      E-value: 7e-89; Score: 325.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily alpha/beta-Hydrolases 4.4e-38
    Gene3D no description 8.9e-28
    HMMPanther ALPHA/BETA HYDROLASE RELATED 3.3e-11
    HMMPfam Alpha/beta hydrolase fold-1 9e-09

    See the detailed result >

    AT3G48410.1

    Model type
    Protein coding
    Short Description
    alpha/beta-Hydrolases superfamily protein
    Computational Description
    alpha/beta-Hydrolases superfamily protein; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT2G36290.1); Has 1039 Blast hits to 1035 proteins in 267 species: Archae - 10; Bacteria - 561; Metazoa - 10; Fungi - 51; Plants - 319; Viruses - 0; Other Eukaryotes - 88 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR