K25725

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	decreased length (PATO:0000574) (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K25725

Determination of introduced cDNA(s)

J033046L15 - Rice Full-length cDNAs - Original: J033046L15

full reading [+] show sequence

GTGCCGAGCC AGAGTCAACC ACGCCCGCAC AACGCGAAAA CACCGCGTTT 
CCCCCACCAT TTCCGCCCGA AATCAACCGG GCCAAGAAAA AAAAAAAAAA 
ACAGCACACC GCCGACGAGA TGCGCCTCCA CCTCGCCCTC CTCGCCGCGC 
TCCTCACCCT CGCCGCCGCC GCCCAGCCGC CATTCCGCGG CTACTACTAC 
CTGCTCGACT GCGGCGCCGC GGCGTCCACC ACCGACAGCC GCGGCCTCGA 
GTGGCTCCCC GATGGCGGCT ACGTCACCGG CGGCGAGCCC CACCAGCTCC 
CCGACCAGGG CCTCCTCGAC CCGGCGCTCG CCACCCGCCG TGACTTCCCG 
CACGAGCCCG GGAAGAAGTT CTGCTACGAG CTCCCCGTCG ACCGCAACCG 
CCGCTACCTG CTCCGCCCCA CCTTCTTCTA CGGGGCCTCC TCGCCGCCGC 
CGCCCGTCTT CGACCTCATC GTGGACGGCA CCTTCTGGAC CGCCGTCAAC 
ACCACCGACG ACGTCCTCGC CGGCAGCGCC TCCTACTACG AGGCCGTCTT 
CGGCGCGAGC GGCAGGAACA TGAGTTTCTG CCTCGGCGTG AACCCGGACT 
ACACCAGCGC TGGCCCTTTC ATCAACGCGC TGCAGGTGAT CCAGCTTCAC 
GATTCGGTGT ACAACGCCAC GAACTTCACT ACCAGCGCCA TGGGGCTCAT 
TGCGCGTACC AAGTTTGGCT CCACCGACGG TGTTGAGAGG TACCCTAATG 
ACACCTTCAA TCGGTATTGG CAGCCATTCC CAGACAGTAA ACATGCAGTC 
AGTAGTACCC ACAATGTCAC ATCGGCTGAT TTTTGGAATC TTCCACCTCC 
TGGGGTGTTT AATACAGCTT TGGTGGCAGA ACAAGATGCA CCCTTGGTGC 
TGCAATGGCC TCCAATACCT CTCCAGAATG ATAGCTATTA TGTTGCTCTT 
TATTTTGCTG ATACAGTCTC TGAGAGTTCA AGGACCTTTA ATGTATATAT 
AAATGATTAC AGCTTCTATG AAGGCCTAAC AGTAACATCA GCTGGTCTTT 
CTGTCTTTGC AACACAATGG ATTCTCTCAG GCTTGACCAG AGTTATTTTG 
GCTCCTATTT CTGGCCTTCC TCCACTTATC AATGCTGGTG AAGTCTTTGG 
ACTTTTCCCA CTAGGAGGAT ACACATTTCC TCGGGATGCA CATGCCCTGG 
AAGCTATTAA GAGAAGCCTT CAAAATATAC CTGATGATTG GAATGGAGAT 
CCATGTATGC CTCATGGATA TGCTTGGACT GGAGTTACAT GTGATAAAGG 
CCAAATACCA CGTGTCATCT CACTGAACTT TTCAAGTATG GGCCTCTCTG 
GATATCTTTC ATCTGATATT GCAAGGCTCA CCGCTCTGAC TGATATATCT 
TTTGCAAACA ATAGCTTGTC TGGACCTATT CCAAATCTCA GCAACCTGAG 
GAATCTCACA AGACTGCACC TGCAGGACAA CAAATTAAAT GGAACAGTAC 
CGCAGACACT GGGGATAATC ACATCTTTGC GTGAACTATT CTTGCAGAAC 
AATGAACTGG ATGGAGCAGT TCCACTGAAC TTGCTGTTGA ATCAAGGTTT 
GACTTACCAG TTTCTTCCGG GGAACAACTT TTTTCCAAGA CCACCTCGCT 
GACAATCAGG CATTTTATTT GCAACCAATT GCTCCCAACT GTACTCAACA 
GAATTCAAAA CTAGGAGGAC AATTTGTCGA TTCTTTGGGT GGCTACACCA 
AGATTTTGTT GCCGTTCTGT ACATGAAAGC AAGTTTACAG TGTCAGATGA 
TTTGGACCTA GTCAAAGCCG TTAGCAACGG TAGTGAATAG TAGAACTGAT 
TGTACAGTTT GTTGTAGGTT ACATTGTCAA TATATTCAGG AGGAAGGGTT 
GTGATACCCA AGAAGTGTTT GATGATCTTT CGGGACATTG CCCTTGAAAC 
TAGAACCGGA TACTGTACTG TGAGGCTGTG AAAGGGGACA CAATATATAT 
GGTCTACGTC TTTTTTTTTC TTTTTGGTGC TTC

Gene models with high sequence identity

AT3G05990.1 [+] show detail - Leucine-rich repeat (LRR) family protein
E-value: 8e-125; Score: 444.00

InterPro Scan Digest

Program	Description	E-value
superfamily	L domain-like	7.9e-25
Gene3D	no description	3e-22
HMMPanther	SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE	1.6e-19
HMMPfam	Leucine-rich repeat-containing N-terminal domain, type 2	0.0000049

See the detailed result >

AT3G05990.1

Model type: Protein coding
Short Description: Leucine-rich repeat (LRR) family protein
Computational Description: Leucine-rich repeat (LRR) family protein; INVOLVED IN: signal transduction; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT3G19230.1); Has 48781 Blast hits to 12236 proteins in 453 species: Archae - 4; Bacteria - 457; Metazoa - 323; Fungi - 23; Plants - 45747; Viruses - 0; Other Eukaryotes - 2227 (source: NCBI BLink).
Link: InterPro Scan - TAIR