K25728

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	increased size (PATO:0000586) (Seed::Shape::large) increased length (PATO:0000573) (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K25728

Determination of introduced cDNA(s)

J023002D21 - Rice Full-length cDNAs - Original: J023002D21

full reading [+] show sequence

GAGCCGGAGC CCGACTCGAG CGAAAGCGTA CTGAGCACAC CACCAACGAA 
CACCAGAAAA ACCTCGGCTC TCGTCTGCTC GATCGAACAA GTTCCTCCTC 
CCCTTCTCCC CCCATCCATC CGGCCCTGGC GTTTCCCCCG CCGTTTCCGC 
GTCTCGATCG TCTCGCCCCG CTCTCCGCCC GCGTCAGCCG GGAGTTTGGC 
CTGGCCAGCG CGGCGGCTGG CTAGGGTTTC TCCGGCGCGC GCCCGCGGCC 
GCCATGGAGA ACCTCATCTC GCTCGTCAAC AAGCTACAGC GCGCGTGCAC 
CGCCCTCGGC GACCACGGCG AGGAGAGCGC GCTGCCCACC CTCTGGGACT 
CGCTCCCGGC CATCGCCGTC GTCGGCGGCC AGAGTTCGGG TAAATCGTCA 
GTGTTGGAGA GTGTTGTTGG GAAGGATTTC CTGCCTCGAG GCTCAGGAAT 
TGTTACACGG CGCCCTCTGG TCCTGCAACT CCATAGGATT AATGGAGATA 
GAGAATACGC AGAGTTCATG CACAATCCTA CCGTTAAATA TACAGATTTT 
GCTCTTGTGA GGAAAGAGAT TGCAGATGAA ACTGAACGAG CTACCGGCCA 
TAAAAAGCAA ATATCACCTG TGCCCATTTA TTTGAGCATA TATTCACCAA 
ATGTTGTTGA CCTCACTCTT ATTGATCTTC CTGGCCTTAC TAAAGTAGCT 
GTTGAGGGAC AATCTGACAG TATTGTGCAA GACATTGAAA CCATGGTTCG 
CTCATTTATT GAAAAGGTAC TGTTGAATAA CCTGCACAAG TTTTTTTTAT 
TACCATAGAT GAGCATATGT AACAGCTTCA GCTGAATAAA GGGGGTGATG 
ATGCACATCT TAAGTAATTT TGTCAACTGA CATTATCTTA TCCTTTCCCT 
CTATAAGCTA TTATTTACCC ATCATTTGTT ATGCTTGTAC ATTCCATAAA 
AGATGTGCAT AACAAATGCT CTAGTTTACT CTTTACAGCC CAACTGCATT 
ATTCTTGCAA TTTCTCCAGC AAATCAGGAT CTTGCAACTT CCGATGCCAT 
AAAGATTTCA CGTGAAGTTG ATCCAAAAGG TATGGCTCAA CTAAAGGTAC 
CAATTTAATG AAGAAGAGTA CGAGTAAGTG ATGCTGTGGC TACTGGTTAG 
AATTATTGGG AGTGTTCTTA TGTAATTGTA TGTAAAGTGA ACTTAATGTG 
GCAATCTCAT CCAGATCATG TTTTTTTGAT ATAGTTGCAA CCTAGTATAC 
CAATAAAAGA ATTGTAAAAT AATTGTGATA TTCTATAGAA TAGTAACTCT 
GTTGAATTCA GGTGAAAGGA CCTTTGGCGT ACTCACGAAA ATTGATCTTA 
TGGACAAGGG CACAAATGCT GTTGATATGC TAGAAGGAAG ATCCTATCGA 
CTACAATATC CATGGATTGG TGTTGTCAAT CGTTCCCAGC AAGATATAAA 
CAAGAGCGTT GACATGATTG CTGCCAGGCA TATAGAGCGT GAATATTTTG 
CAAATACCAC GGAATATAGA TACCTTGCTC ATAGAATGGG ATCAGAGCAC 
TTAGTAAAGA TGCTTTCAAA ACATTTGGAA TCTGTGATTA AATCAAGAAT 
TCCAGGGATC CAATCTCTTA TAAGCAAGGC AATTGCAGAG CTAGAAGCTG 
AACTTCATCG TCTCGGAAAA CCTATTGCTG CAGATGCCGG AGGAAAATTG 
TACACAATTA TGGAAATATG CCGCATGTTC GATGGTATCT ACAAGGAGCA 
TCTGGATGGA ATGCGCCCAG GTGGCGAGAA AATCTACTAT GTATTTGACA 
ATCAATTTCC GGTTGCTCTC AAACGATTGC AGTTTGATAA GAATCTTTCA 
ATGGAAAATG TAAGGAAGCT TATAACACAA GCTGATGGAT ACCAACCACA 
TCTCATAGCT CCGGAGCAAG GGTATCGTCA TCTTATAGAG TCTTGCCTAG 
TAAGTATTAG AGGTCCGGCT GAGGCAGCTG TTGATGCGGT CCATGCAATA 
CTCAAGGAAC TAGTTCGCAA GGCTATCAGT GAGACAGATG AGTTAAATCA 
ATTCCCCACT CTCCGTGTGG AAATAAGCAA TGCAGCTTTT GAATCATTGG 
ACAGAATGCG GAATGAAAGC AAGAAAAGTA CTCTGAAGCT GGTTGATATG 
GAGTGCAGCT ATTTAACTGT TGATTTCTTT TGGAAGCTTC CTCAGGATGT 
TGAGAAGGGT GGAAATCCAA CAAACTCTAT TTTTGACAGA TACAATGATT 
CATACCTTAG ACGAATTAGT ACTAATGTTC TGGCATATGT CAATATGGTA 
TGTTCAAGCT TGAGAAACTC CATCCCTAAA TCTATTGTTT ATTGCCAAGT 
CCGGGAGGCA AAGCGCACAT TGCTCGATCG CTTCTTTACA GAATTGGGAG 
CAAGAGAGAT CAAGCACATT TCTAAGCTTC TTGATGAAGA CCCCGCGGTG 
ATGGAGCGTA GAGCTAACCT CGCCAAGAGG TTGGAACTAT ATCGGAGCGC 
CCAGGCAGAA ATCGATGCGG TTGTGTGGGC CAGATAGTCT TGTCAACTAC 
CTTCCATTTT TAGCGTTTTA TGGTTGAGCT CTCCCTCCAG GTAGTTTAGT 
TCATGGATAG TTGCAGCTGG AAGTTGCTAC ACAAACGAGT TCACAAATCA 
CGTTCTTAAA ATCTACACAA ACGACTAAGA ATTAATATTC C

Gene models with high sequence identity

AT5G42080.1 [+] show detail - dynamin-like protein
E-value: 0; Score: 658.00

InterPro Scan Digest

Program	Description	E-value
HMMPanther	DYNAMIN	4.9e-127
HMMPanther	DYNAMIN	4.9e-127
HMMPanther	DYNAMIN	1e-100
HMMPanther	DYNAMIN	1e-100
HMMPanther	DYNAMIN	2.4e-16
HMMPanther	DYNAMIN	2.4e-16
HMMSmart	Dynamin, GTPase domain	1.1e-41
HMMSmart	Dynamin GTPase effector	3.3e-33
Gene3D	no description	7.3e-49
Gene3D	no description	6.6e-26
PatternScan	Dynamin, GTPase region, conserved site	0
ProfileScan	GTPase effector domain, GED	21.871
FPrintScan	Dynamin, GTPase domain	3.7e-33
FPrintScan	Dynamin, GTPase domain	3.7e-33
FPrintScan	Dynamin, GTPase domain	3.7e-33
FPrintScan	Dynamin, GTPase domain	0.00000000099
FPrintScan	Dynamin, GTPase domain	0.00000000099
superfamily	P-loop containing nucleoside triphosphate hyd	2.1e-20
superfamily	P-loop containing nucleoside triphosphate hyd	0.000000000041
HMMPfam	Dynamin, GTPase domain	9.3e-36
HMMPfam	Dynamin, GTPase domain	0.0000011
HMMPfam	Dynamin central region	1.4e-70
HMMPfam	Dynamin GTPase effector	5.1e-20

See the detailed result >

AT5G42080.1

Model type: Protein coding
Short Description: dynamin-like protein
Curator Summary: Encodes a dynamin-like protein related to phragmoplastin. Mutations in this gene, in combination with mutation in ADL1E, result in defects in embryogenesis, cell plate formation and trichome branching. Also controls vascular patterning in combination with VAN3 and GNOM. DRP2B and DRP1A participate together in clathrin-coated vesicle formation during endocytosis.
Computational Description: dynamin-like protein (DL1); FUNCTIONS IN: protein binding, clathrin binding, GTP binding, GTPase activity; INVOLVED IN: in 6 processes; LOCATED IN: in 6 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Dynamin GTPase effector (InterPro:IPR003130), Dynamin, GTPase domain (InterPro:IPR001401), Dynamin, GTPase region, conserved site (InterPro:IPR019762), GTPase effector domain, GED (InterPro:IPR020850), Dynamin central region (InterPro:IPR000375); BEST Arabidopsis thaliana protein match is: DYNAMIN-like 1B (TAIR:AT3G61760.1); Has 2870 Blast hits to 2761 proteins in 321 species: Archae - 2; Bacteria - 66; Metazoa - 1056; Fungi - 810; Plants - 578; Viruses - 0; Other Eukaryotes - 358 (source: NCBI BLink).
Link: InterPro Scan - TAIR