K25737

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K25737

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased width (PATO:0000600)
    (Seed::Shape::wide)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K25737

Determination of introduced cDNA(s)

  • J023121K13 - Rice Full-length cDNAs - Original: J023121K13

    full reading [+] show sequence

    Nucleotide sequence: J023121K13 - full reading 
    GTCCCCCAAA TCAAATCCCC TTCTCCCATT TTTCCTCTCC TCGCTTCTCG 
    CCGCAGCCGC CGCCGCCTCC TCCTCCTCTC GCCATGGCCG CCGCTGCTCC 
    CCCCGCGGGC CCCGGGCTCT ACTCCGACAT CGGCAAGAAG GCTAGAGATC 
    TCCTGTATAG GGATTACCAC ACGGACCAGA AGTTCACGCT CACCACCTAC 
    GCCGCGAACG GAGCTGCAAT CACTGTTGCT GGCACGAAGA AAAATGAGTC 
    CATCTTCTCT GAAATCCAGA GCCAGGTGAA GAACAACAAT GTGTCCGTGG 
    ATGTGAAAGC AACTTCAGAC TCAAAATTGA TAACTACATT CACAGTTCAT 
    GATCTGGGCA CTCCAGGCCT GAAGGGAATT CTATCCATTC CTTTTCCCTA 
    CCAGAAGTCT GCAAAGGCTG AAGTCCAGTA CTTGCATCCA CATGCTGGCC 
    TGAATGCTAT TGTTGGCCTG AATGCAAATC CTCTTGTTAG CTTTTCTGGT 
    GTGTTTGGAA CTGGGGCTTT TGCTGTTGGT ACTGATGTTG CATTTGATAC 
    TGCAACTGGG GACTTCACCA AGTACAATGC GGGACTGAGC CACACTACTC 
    CAGATCTCAC TGCAGCACTG CTTCTGAACA ACAAGGGAGA CAGCCTTGCT 
    GCTTCCTACT ACCACAAGGT GAGCAAAACA AGTGCTGTTG GAGCAGAGCT 
    GGCTCACAGC TTCTCGAGCA ACGAGAACAC TCTCACCTTC GGGACACAGC 
    ATGCCCTGGA TGAACTCACT ACTGTGAAGG CGCGCTTCAA CAACTTTGGC 
    ATGGCCAGTG CGCTCATCCA GCACGAGTTC AGGCCCAAGT CGCTCGTCAC 
    CATCTCCACT GAGGTTGATA CCAAGGCCAT CGACAAGAGC TCCAAGGTTG 
    GGCTGTCCCT GGTCCTCAAG CCTTGAAGGT CGCCTGCTTT TTCTGGTGTG 
    GTTTAGGATG CTAGCTTTTG ATATCAGCAG CTCATTGAAC AAAACTTGTA 
    ATCGGCTTAA CTTTGGTTGC CTCTAGCCTG TTCTAGACTA CATGAGGGTT 
    TCTGTTACCA GTCAATCTGT CTCGGTTTCT TTTTGGTCAT TTGCGGGCAT 
    ATTGATGGGA AAACATGTCC CGGAATCTGA GTGTCAAAAC TCTTGGGTGA 
    AATTGGTCAC GTACTTCAAA GTTCACCCTC TGAATCCAGC TGCAGATACT 
    TCTGTTTGAT TCAAAACCAT ATTTCTTCTC G

    Gene models with high sequence identity

    1. AT5G15090.2 [+] show detail - voltage dependent anion channel 3
      E-value: 3e-87; Score: 319.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Porin, eukaryotic type 2.4e-63
    HMMPanther VOLTAGE-DEPENDENT ANION-SELECTIVE CHANNEL 1, 9.4e-178
    HMMPanther VOLTAGE-DEPENDENT ANION-SELECTIVE CHANNEL 9.4e-178

    See the detailed result >

    AT5G15090.2

    Model type
    Protein coding
    Short Description
    voltage dependent anion channel 3
    Curator Summary
    Encodes a voltage-dependent anion channel (VDAC: AT3G01280/VDAC1, AT5G67500/VDAC2, AT5G15090/VDAC3, AT5G57490/VDAC4, AT5G15090/VDAC5). VDACs are reported to be porin-type, beta-barrel diffusion pores. They are prominently localized in the outer mitochondrial membrane and are involved in metabolite exchange between the organelle and the cytosol.
    Computational Description
    voltage dependent anion channel 3 (VDAC3); CONTAINS InterPro DOMAIN/s: Porin, eukaryotic type (InterPro:IPR001925); BEST Arabidopsis thaliana protein match is: voltage dependent anion channel 1 (TAIR:AT3G01280.1).
    Link
    InterPro Scan - TAIR