K25746

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K25746

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K25746

Determination of introduced cDNA(s)

  • J013169K10 - Rice Full-length cDNAs - Original: J013169K10

    full reading [+] show sequence

    Nucleotide sequence: J013169K10 - full reading 
    ATGTGTCATG CGAGTCCATG ACCCCCTCTT CTACTGGAAG GTGGCGACGG 
    AAGCAGACCT TGGTCTGGCA GATGCCTACA TCAACGGCTA CTGCTCTTTC 
    GTCGACAAGA AACAGGGCCT TCTCAACCTT CTATTGATTC TGATTGCTAA 
    CAGAGACGCC AACAAGCAGA GCAGCACCAG CACCAGCAGA ATAAGAGGCT 
    GGTGGACACC GATGCTTCTG ACGGCCGGGG TCGCGTCTGC CAAATACTTC 
    CTGCGCCGCG TGTCCAGGAA GAACACTGTC ACACAGACTC GCCAGAACAT 
    CTCCCAGCAC TACGACCTGA GCAACGATTT CTTCTCCCTT TTCCTGGATC 
    CATCGATGAC ATACTCTTGT GCCGTCTTCA AGGACGAGGA CGAGAGTTTA 
    GAAGCAGCCC AGCAGCGCAA AGTTAGCCTG CTAATCCACA AGGCTAGGGT 
    GGAGCGAGAT CGCCATGTTC TCGAGATTGG TAGTGGCTGG GGCAGCCTAG 
    CGATACAGGT GGTCAAGCAG ACTGGTTGCA AATACACTGG GGTCACACTG 
    TCTGAGGAGC AGCTTAAATA TTGCCAGAGA AAAGTGAAGG AAGCTGGTCT 
    AGAGGACCAC ATGACTTTCC TGCTGTGCGA CTACCGTCAA ATACCAACAG 
    TTCGAAAATA TGACAGGATC ATATCTTGTG AAATGATCGA AGGGGTAGGC 
    CATGAATACA TGGACGATTT CTTCGGCTGC TGCGAGTCTC TCCTGGCACA 
    GGATGGCCTG TTCGTCCTCC AGTTCATCTC CATCCCTGAA GAACGGTACG 
    AAGAATACAG GGGGAGTTCA GACTTCATCA AGGAATACAT ATTTCCTGGG 
    GGTTGCCTTC CATCCTTGTC TCGGATAACA TCCGCCATGT CCACCTCGTC 
    GAGGCTATGC ATCGAGCACT TGGAGAATAT TGGGTACCAC TACTACCCCA 
    CGCTGATACG CTGGCGGGAC AACTTCATGG CTAACAGAGA AGAGATAAAG 
    TCCCTGGGAT TCGATGACAA GTTCATCCGC ATATGGGAGT ACTATTTCAT 
    ATACTGCGCA GCTGGGTTCA AGTCACGTAC ACTTGGAAAC TACCAGATTG 
    TGTTGTCTCG GCCTGGCAAC GACAAGCTGC TGCCCTTTGC CGACAACCCT 
    TACGCCACCT TCCCGGCAGC CTAGCCATGA AACCGGCCAA CTTGAAAATA 
    TATATGTTTT GTCTAGCTAA AGCTTCCATT GATTGTGTGC GAATGTGCAA 
    ACAGCATGAA ACGATTCATT TGATTGATAT ATGCATTTGA ATAACACTCC 
    ATTTGATTGA TATATATATT TGTATAATAT TCCATTTTCA ATAGAAAAAA 
    CTATAGAGGT AAACTCC

    Gene models with high sequence identity

    1. AT3G23530.1 [+] show detail - Cyclopropane-fatty-acyl-phospholipid synthase
      E-value: 1e-153; Score: 539.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther 2-HEPTAPRENYL-1,4-NAPHTHOQUINONE METHYLTRANSF 0.0000000016
    HMMPanther METHYLTRANSFERASE 0.0000000016
    Gene3D no description 1.7e-98
    superfamily S-adenosyl-L-methionine-dependent methyltrans 1.5e-79
    HMMPIR Cyclopropane-fatty-acyl-phospholipid synthase 6.7e-103
    HMMPfam Cyclopropane-fatty-acyl-phospholipid synthase 2.5e-86

    See the detailed result >

    AT3G23530.1

    Model type
    Protein coding
    Short Description
    Cyclopropane-fatty-acyl-phospholipid synthase
    Computational Description
    Cyclopropane-fatty-acyl-phospholipid synthase; FUNCTIONS IN: cyclopropane-fatty-acyl-phospholipid synthase activity; INVOLVED IN: lipid biosynthetic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Amine oxidase (InterPro:IPR002937), Cyclopropane-fatty-acyl-phospholipid/mycolic acid synthase (InterPro:IPR003333), Adrenodoxin reductase (InterPro:IPR000759); BEST Arabidopsis thaliana protein match is: Cyclopropane-fatty-acyl-phospholipid synthase (TAIR:AT3G23510.1); Has 14893 Blast hits to 14869 proteins in 1968 species: Archae - 117; Bacteria - 7289; Metazoa - 156; Fungi - 477; Plants - 317; Viruses - 0; Other Eukaryotes - 6537 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR