K25802

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	cauline leaf (PO:0000013)	decreased size (PATO:0000587) (Cauline leaf::Shape::small)
	rosette leaf (PO:0000014)	decreased size (PATO:0000587) (Rosette leaf::Shape::small) increased width (PATO:0000600) (Rosette leaf::Shape::wide) dark green (PATO:0001249) (Rosette leaf::Color::dark)
	sporophyte vegetative stage (PO:0007134)	decreased speed (PATO:0000304) (Adult plant::Growth::slow)
	stem (PO:0009047)	abnormal (PATO:0000460) (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K25802

Determination of introduced cDNA(s)

J023132O17 - Rice Full-length cDNAs - Original: J023132O17

full reading [+] show sequence

GATCGATCGC TTCATCACTC GCTAGCTCAT CACTGCGAGC GGAGACAGCT 
CAGGAGGGAG GAAGCAAAAG AAGAGAGAGA GAGATCAAGA GATAGACGAA 
GAGATTTGTC TGTGTAAATC AATGGAAGGG CAGCAGTTCG CTTGGGGAAG 
GGAGGAGGGA GGGTGGAGGA AAGGGCCATG GACAGCGCAG GAAGACAAGC 
TGCTGGTTGA GTACGTGAGG CAGCACGGCG AAGGGAGGTG GAATTCTGTC 
GCCAAGATCA CAGGTCTGAA GAGAAGTGGC AAGAGCTGCA GGCTTCGTTG 
GGTGAACTAC CTGAGACCTG ACCTCAAGCG AGGCAAGATC ACGCCACAGG 
AGGAGAGCGT CATACTCGAG CTTCATGCCT TGTGGGGAAA CAGGTGGTCG 
ACGATCGCGC GTAGCCTGCC TGGCAGGACG GACAACGAGA TCAAGAACTA 
CTGGAGGACG CACTTCAAGA AGGGCAAGCC GTCCAAGAAC ATCGAGCGCG 
CGAGGGCTCG GTTCCTGAAG CAGCGCCGCG AGATGCAGCA GCAGAGCCAG 
CTGATGCAAA CCGGCCAGCA GCAGCAGCTC GGCCAAGACG ACGACGCCAC 
CAGCGCGGTG GTGGACGACA ACCTTGCGGA GGTCGCGCCA CCAGCCGCCA 
CCTCGCTGAC CCACGACGGC GAGCTCCAGA TAATGCAGGA GATGGCGCCG 
GACATGGACG ACCTGCTGTA CTACCACCCG GGAGACATGT CGCCCTATTC 
CTACGACGAC CTCCTCGGCA GCGGCGGCGG CGAGTGCGGC GCCGTGGCGG 
CCAGCGCTGG CGCTGCCGCC TCGACGAGCG AGGGCTCAAG CGAGGAGCTC 
GACGGCGGCG CCGCCACGTG GGGCAGCCTG TGGAACCTCG ACGACGTGGT 
GCACGACATG ATGATCGACT GCGCCGCCGG CGCCGGCTGC TGCCGGGGTA 
GCTTCCCTCC GCTACAGGAT AAAGGCCTCG CTTTCTACTA GCTATAGCTT 
AACGATTACT AAATTGCTAG CTAGCTATAG CTACAAGCCT ACACACTCTA 
CAAGTAGATG TTCCTTTTGG TCTTGTGCAT CGATCCAAAC TGATAGCACA 
CAGCAGCCTG TGCGTGTGGA GGAGGTCACA CGTAGTGACT ATGCAGGTGA 
GAGCGAGAGG CCATTTTGTG TACACGAAGT GTTGGTGGAT AAGGATGCAA 
CACCAACTAT ACTCCACTTT GAGTAGCTAG CTCGCCTCGA TGGCATGTTT 
GGCTCATTTG AGAGCGCTTT TTCTAGGAGA AAAAGGAAGG GAAGAGTTTT 
TTTCTT

Gene models with high sequence identity

AT3G24310.1 [+] show detail - myb domain protein 305
E-value: 6e-57; Score: 218.00

InterPro Scan Digest

Program	Description	E-value
superfamily	Homeodomain-like	3.4e-21
superfamily	Homeodomain-like	1.3e-09
ProfileScan	HTH transcriptional regulator, Myb-type, DNA-binding	24.933
ProfileScan	HTH transcriptional regulator, Myb-type, DNA-binding	16.542
Coil	coiled-coil	0
HMMSmart	SANT, DNA-binding	7.4e-17
HMMSmart	SANT, DNA-binding	4.5e-15
HMMPanther	R2R3-MYB TRANSCRIPTION FACTOR	7.9e-76
HMMPanther	Myb transcription factor	7.9e-76
HMMPfam	Myb, DNA-binding	6.9e-17
HMMPfam	Myb, DNA-binding	1.1e-13
Gene3D	Homeodomain-related	6e-16
Gene3D	Homeodomain-related	7e-16

See the detailed result >

AT3G24310.1

Model type: Protein coding
Short Description: myb domain protein 305
Curator Summary: snapdragon myb protein 305 homolog (myb)
Computational Description: myb domain protein 305 (MYB305); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 79 (TAIR:AT4G13480.1); Has 8987 Blast hits to 8204 proteins in 475 species: Archae - 0; Bacteria - 0; Metazoa - 778; Fungi - 510; Plants - 5849; Viruses - 4; Other Eukaryotes - 1846 (source: NCBI BLink).
Link: InterPro Scan - TAIR