K25802

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K25802

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K25802

Determination of introduced cDNA(s)

  • J023132O17 - Rice Full-length cDNAs - Original: J023132O17

    full reading [+] show sequence

    Nucleotide sequence: J023132O17 - full reading 
    GATCGATCGC TTCATCACTC GCTAGCTCAT CACTGCGAGC GGAGACAGCT 
    CAGGAGGGAG GAAGCAAAAG AAGAGAGAGA GAGATCAAGA GATAGACGAA 
    GAGATTTGTC TGTGTAAATC AATGGAAGGG CAGCAGTTCG CTTGGGGAAG 
    GGAGGAGGGA GGGTGGAGGA AAGGGCCATG GACAGCGCAG GAAGACAAGC 
    TGCTGGTTGA GTACGTGAGG CAGCACGGCG AAGGGAGGTG GAATTCTGTC 
    GCCAAGATCA CAGGTCTGAA GAGAAGTGGC AAGAGCTGCA GGCTTCGTTG 
    GGTGAACTAC CTGAGACCTG ACCTCAAGCG AGGCAAGATC ACGCCACAGG 
    AGGAGAGCGT CATACTCGAG CTTCATGCCT TGTGGGGAAA CAGGTGGTCG 
    ACGATCGCGC GTAGCCTGCC TGGCAGGACG GACAACGAGA TCAAGAACTA 
    CTGGAGGACG CACTTCAAGA AGGGCAAGCC GTCCAAGAAC ATCGAGCGCG 
    CGAGGGCTCG GTTCCTGAAG CAGCGCCGCG AGATGCAGCA GCAGAGCCAG 
    CTGATGCAAA CCGGCCAGCA GCAGCAGCTC GGCCAAGACG ACGACGCCAC 
    CAGCGCGGTG GTGGACGACA ACCTTGCGGA GGTCGCGCCA CCAGCCGCCA 
    CCTCGCTGAC CCACGACGGC GAGCTCCAGA TAATGCAGGA GATGGCGCCG 
    GACATGGACG ACCTGCTGTA CTACCACCCG GGAGACATGT CGCCCTATTC 
    CTACGACGAC CTCCTCGGCA GCGGCGGCGG CGAGTGCGGC GCCGTGGCGG 
    CCAGCGCTGG CGCTGCCGCC TCGACGAGCG AGGGCTCAAG CGAGGAGCTC 
    GACGGCGGCG CCGCCACGTG GGGCAGCCTG TGGAACCTCG ACGACGTGGT 
    GCACGACATG ATGATCGACT GCGCCGCCGG CGCCGGCTGC TGCCGGGGTA 
    GCTTCCCTCC GCTACAGGAT AAAGGCCTCG CTTTCTACTA GCTATAGCTT 
    AACGATTACT AAATTGCTAG CTAGCTATAG CTACAAGCCT ACACACTCTA 
    CAAGTAGATG TTCCTTTTGG TCTTGTGCAT CGATCCAAAC TGATAGCACA 
    CAGCAGCCTG TGCGTGTGGA GGAGGTCACA CGTAGTGACT ATGCAGGTGA 
    GAGCGAGAGG CCATTTTGTG TACACGAAGT GTTGGTGGAT AAGGATGCAA 
    CACCAACTAT ACTCCACTTT GAGTAGCTAG CTCGCCTCGA TGGCATGTTT 
    GGCTCATTTG AGAGCGCTTT TTCTAGGAGA AAAAGGAAGG GAAGAGTTTT 
    TTTCTT

    Gene models with high sequence identity

    1. AT3G24310.1 [+] show detail - myb domain protein 305
      E-value: 6e-57; Score: 218.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Homeodomain-like 3.4e-21
    superfamily Homeodomain-like 0.0000000013
    ProfileScan HTH transcriptional regulator, Myb-type, DNA-binding 24.933
    ProfileScan HTH transcriptional regulator, Myb-type, DNA-binding 16.542
    Coil coiled-coil 0
    HMMSmart SANT, DNA-binding 7.4e-17
    HMMSmart SANT, DNA-binding 0.0000000000000045
    HMMPanther R2R3-MYB TRANSCRIPTION FACTOR 7.9e-76
    HMMPanther Myb transcription factor 7.9e-76
    HMMPfam Myb, DNA-binding 6.9e-17
    HMMPfam Myb, DNA-binding 0.00000000000011
    Gene3D Homeodomain-related 6e-16
    Gene3D Homeodomain-related 7e-16

    See the detailed result >

    AT3G24310.1

    Model type
    Protein coding
    Short Description
    myb domain protein 305
    Curator Summary
    snapdragon myb protein 305 homolog (myb)
    Computational Description
    myb domain protein 305 (MYB305); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 79 (TAIR:AT4G13480.1); Has 8987 Blast hits to 8204 proteins in 475 species: Archae - 0; Bacteria - 0; Metazoa - 778; Fungi - 510; Plants - 5849; Viruses - 4; Other Eukaryotes - 1846 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR