K25804

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K25804

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K25804

Determination of introduced cDNA(s)

  • J013043E20 - Rice Full-length cDNAs - Original: J013043E20

    full reading [+] show sequence

    Nucleotide sequence: J013043E20 - full reading 
    GACTAATGTC CCCCATATTG CAGCCTCCTC CCGCTTCTTC TCCAGCTGCA 
    GTCGTTGCAC CTGCAGGATT AGAAGAAGTG GGAAGACGAG GATAGGAGCT 
    TCTGCTGCTG GTCGTAGGTG CAGTAGTGAT GATTCTGCTT GTTCAGAACC 
    CTCTGAGCAG CAAAATGCAG ATTTCTTTTC AGGTCCCATA TCTTCTCTTT 
    GTTATACAAG GAGGGACTTT GCTTCTGTTG CTCTGCTCCC TTTCATACTT 
    CCTCATGTTC ATATAGCGAG TGCGGCTGAG CCAATTGATG GTTCAATTAT 
    TCAAAACGGT GTGAGGAATG TTTTATCCAA GGTCAAGGCT GCTGGCATGC 
    TTCGTTTGGC TTTCCATGAT GCAGGGACTT TTGATATTGC TGATAAATCA 
    GGTGGCATGA ATGGATCTAT AATTTATGAA GTTGATAGAC CTGAAAATAC 
    TGGGCTAAAT AAATCCATAA AGGTATTAGG AAAAGCGAAA GAAGTAATTG 
    ACCTTGTGCA GCAAGTATCA TGGGCGGATT TGATTGCCGT GGCTGGTGCT 
    GAGTCAGTTG CGCTATGTGG AGGGCCAGAA ATTCCAGTAA GACTAGGTCG 
    ATTAGATTCC AGTACTGCTG ATCCTGCTGG TAAACTTCCT GAAGAAACAT 
    TGGATGCCAC TGCGCTGAAA ACATTATTCA GCAAAAAGGG CTTTTCGACA 
    CAGGAGATGG TTGTGTTATC TGGAGCACAC ACAATTGGAG GTAAAGGATT 
    CGGGAATCCA AATATTTTCG ACAACTCCTA TTTTAAAGTA CTCCTTGAGA 
    AGCCACAGCC ATCTTCATCT GGCATGCCGG CAATGGTAGG ACTGCGAACG 
    GATTGGGCAC TCACTGAAGA TGATGAATGC TTAAGATGGA TCAATTTATA 
    TGCACAGGAC CAAGCTAAAT TTTTTACCGA CTTCAAGGAT GCATACATCA 
    AGCTTGTAAA TACTGGAGCC TCATGGAGAT CAGCTTAATT TTACTCGCAC 
    ACAGCTCTCT CTCGTGTAGG CTATTAGGCA CGATTCAAAC GTAGGAACCT 
    CAGAGAATTT TTGTGGAAAA CAAAGCAATG GAGGTCTGGA TTTCTTAATA 
    TTTACTCCAA AGACAAGCTT TCACCGTAAA TTTCTTACTG TTACGAAATC 
    ATAGTCATTA AATAGGAGTT TCGAACATGA ATCCAACAAA TATATTTTTG 
    TATAGCAAAA CCTATATATT ATTTTATTAC CAAGGGTCAA AGCATAGAAC 
    TAGACAATCA AAATCCTCCT TATATTTTTG AATGTAGGGG GCTAATAAAT 
    CATGCAGTTC TGTAGGATAT ATTTTCAACA AACATCAATA AGGAATGTAA 
    GAATTGGAAC TTTCATGTTA AAGGCAGCGT TCTTTTCTGA AACTTCAAAC 
    GTC

    Gene models with high sequence identity

    1. AT4G32320.1 [+] show detail - ascorbate peroxidase 6
      E-value: 2e-87; Score: 320.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Haem peroxidase, plant/fungal/bacterial 1.4e-42
    superfamily Haem peroxidase 2.5e-69
    PatternScan Peroxidases heam-ligand binding site 0
    PatternScan Peroxidase, active site 0
    ProfileScan Haem peroxidase, plant/fungal/bacterial 19.466
    FPrintScan Plant ascorbate peroxidase 4e-27
    FPrintScan Plant ascorbate peroxidase 4e-27
    FPrintScan Plant ascorbate peroxidase 4e-27
    FPrintScan Plant ascorbate peroxidase 4e-27
    FPrintScan Plant ascorbate peroxidase 4e-27
    FPrintScan Plant ascorbate peroxidase 4e-27
    FPrintScan Plant ascorbate peroxidase 4e-27
    FPrintScan Haem peroxidase, plant/fungal/bacterial 7.5e-19
    FPrintScan Haem peroxidase, plant/fungal/bacterial 7.5e-19
    FPrintScan Haem peroxidase, plant/fungal/bacterial 7.5e-19
    FPrintScan Haem peroxidase, plant/fungal/bacterial 7.5e-19
    Gene3D no description 1.3e-08
    Gene3D no description 4.2e-24

    See the detailed result >

    AT4G32320.1

    Model type
    Protein coding
    Short Description
    ascorbate peroxidase 6
    Curator Summary
    Encodes a cytosolic ascorbate peroxidase APX6. Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells. Eight types of APX have been described for Arabidopsis: three cytosolic (APX1, APX2, APX6), two chloroplastic types (stromal sAPX, thylakoid tAPX), and three microsomal (APX3, APX4, APX5) isoforms.
    Computational Description
    ascorbate peroxidase 6 (APX6); FUNCTIONS IN: L-ascorbate peroxidase activity, peroxidase activity, heme binding; INVOLVED IN: response to oxidative stress, oxidation reduction; LOCATED IN: cytosol; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant ascorbate peroxidase (InterPro:IPR002207), Peroxidases heam-ligand binding site (InterPro:IPR019793), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016), Peroxidase, active site (InterPro:IPR019794); BEST Arabidopsis thaliana protein match is: ascorbate peroxidase 2 (TAIR:AT3G09640.2); Has 8064 Blast hits to 8032 proteins in 1269 species: Archae - 53; Bacteria - 2233; Metazoa - 2; Fungi - 806; Plants - 4037; Viruses - 0; Other Eukaryotes - 933 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR