K25828

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K25828

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K25828

Determination of introduced cDNA(s)

J013031H05 - Rice Full-length cDNAs - Original: J013031H05

full reading [+] show sequence

GGTTCTCTTC TCTCTTCTCT CTGCTGCTGC TGCGGCGCTG CAGCTTCTCC 
TCCTCTTCTT CCGCCGCGGA TTTTGGCCGG AATTTCGCCG GAAAAATCTG 
GTTTTTTCAA GTCTCTTCTT TGCCTGCGGC GGAGGCGCGT GGATTTTTTT 
CTTCTCTGCT GCTTCGTCTT CTCCCATCCC TCTCCCTCTC TTGCCGCGAG 
GAGGGGAGAG GGGGACTTGA TGAAGAGAAG ACTGGTGGTC GTAGCATTGG 
TGTTGCTGGC CGTTGTTGAG TTGGTTCATG GCGATGGGTG GCGATGGGCG 
CCGGGGTCGC GGCCTCACAG CGTGACCATC ACCGAGTTCG GCGCCGTCGG 
CGATGGCAAG ACGCTCAACA CCCTGCCCTT CCAGAACGCC GTCTTCTACG 
CTCGGTCCTT CGCCGACAAG GGCGGCGCGC AGCTGTACGT GCCCAAGGGA 
CGGTGGCTCA CTGGCAGCTT CAACCTCACC AGCCACCTCA CCCTCTTCCT 
CGAGGAAGAG GCCGTCATCA TCGGCACAAA GGATCCATCA CAGTGGCCGA 
TTGTGGAACC TTTGCCATCT TATGGGCAAG GATTAGATCT TCCAGGTCCT 
AGACACCGCA GTTTAATAAA TGGATATAAT TTAAGTGATG TTGTCATTAC 
TGGGAATAAT GGAGCTATTG ATGGTCAGGG CTCGGTATGG TGGGATTGGC 
TTCACTCCCA TGAGCTTAAC CATAGCCGAC CTCATATTGT GGAGTTTCTG 
CATTCCGAAG AAGTTGTAAT CTCAAACTTA ACATTTTTAA ATTCTCCAGC 
CTGGAGCATA CATCCAGTGT ATTGCAGCAA TGTAAAGGTC CACAATGTCA 
CAATCAAGAC CTCATTGGAT GCTCCACTCA CTGATGGCAT AGTTCCAGAT 
TCATGTTCCA ACGTGTGCAT TGAGGATAGC AGCATTAGTG TTGGTCATGA 
TGCCATATCA CTCAAAAGCG GGTGGGACAA TTACGGAATT TCTTTTGGAA 
GGCCAACCTC AGACATTCAT ATCAGTAGGG TTGATCTGCA AGCATCGTCT 
GGAGCTGCTC TTGCAATTGG TAGTGAAATG TCTGGTGGAA TTTCAGATAT 
TCATGTTGAT CACATTCGAA TCGGCAGTTC CAGTAAAGGC ATCTCCTTCA 
GGACTACTCC GGGACGTGGA GGTTACATAG CGGAAGTTGT CGTCGCAGAT 
GTAGTAATGG ATAGTGTCCA TCTCGCCATT GAGTTTACCG GTAACTGGTC 
AAGCCACCCA GATGACCATT TTGATCCATC TTTTCTTCCG GTGATAGATC 
AAATCACCCT TAAGAATATG GAGGGGACAA ACATCTCTGT TGCTGGAGTT 
CTATCAGGAA TCGAGGGTGA TCCATTTAGT GCTATATGCC TTTCTAATCT 
CAATTTCTCT ATAGCCGATT TGGCTCCTTC CAGTGCCTGG ACTTGTTCAA 
ATGTGCATGG ATATTCTGAA TTAGTATTCC CCAAGCCTTG CTCAGAACTC 
CATGACACAT CTACAAACTC CTCCATCTGT TTCTCCCTCT CTAGTTACAG 
TGCCCTCGCA GTACTATAAA TATACAGAGT AATCTTGTGT CCATCCTTCC 
CCTGTCTTGT TCCAGTCCTT GTACAATTCA GAAATTGAGC ATCCATCACC 
ATCTTTCCAA TTCTTTACCA CCAATAAATT CATCACAAGA ATGAAACAGT 
ACCCCTCTTA TGGTCCTAAG GCTCAGATTA TAAGCTGCAT AATGATCTTG 
AGGAGGAAGA ATCTAAGTGG GGTTGTGGAT AGCTAGGTGC ATGCCTGTAC 
AGCTACATTT CTTCATTCAA TCTGTAAGAA AAAAAATTTC TTTTTTGGTA 
GGGTTGAGTG CAGGATATTT TCTTCATACA ATTGTCATTT GGTTATAAAT 
TATCACATCA TGATTAAATT ATCTCTGTAT ATTCTATCTC TGTGAGCAAC 
ATTCTAATAG AGCAGATCAC ATGTTATCCT GG

Gene models with high sequence identity

AT3G16850.1 [+] show detail - Pectin lyase-like superfamily protein
E-value: 8e-141; Score: 498.00

InterPro Scan Digest

Program	Description	E-value
HMMSmart	Parallel beta-helix repeat	460
HMMSmart	Parallel beta-helix repeat	880
HMMSmart	Parallel beta-helix repeat	1200
HMMSmart	Parallel beta-helix repeat	5400
Gene3D	Pectin lyase fold	3.4e-94
HMMPfam	Glycoside hydrolase, family 28	3.1e-32
superfamily	Pectin lyase fold/virulence factor	2.6e-83

See the detailed result >

AT3G16850.1

Model type: Protein coding
Short Description: Pectin lyase-like superfamily protein
Computational Description: Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: vacuole, plant-type cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Glycoside hydrolase, family 28 (InterPro:IPR000743), Pectin lyase fold (InterPro:IPR012334), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT3G06770.2); Has 3152 Blast hits to 3138 proteins in 427 species: Archae - 6; Bacteria - 1355; Metazoa - 8; Fungi - 358; Plants - 1330; Viruses - 0; Other Eukaryotes - 95 (source: NCBI BLink).
Link: InterPro Scan - TAIR