K25836

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K25836

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased width (PATO:0000600)
    (Seed::Shape::wide)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K25836

Determination of introduced cDNA(s)

  • J023106D22 - Rice Full-length cDNAs - Original: J023106D22

    full reading [+] show sequence

    Nucleotide sequence: J023106D22 - full reading 
    TAGCCGCACC GCACGCTTTC TTGCATAAGA ACTCCCCCCC CTCCTCGCTC 
    CCCGCCGCCG CCGCCGTTTT CTTGGAGAGG AGAAATCCGT AGGCTCAGAG 
    GATTTTTGGT AGTCTTGTTT CGTGATATTC GTGAAGAGGG GGGGAGCTAA 
    GGGGGGATTC GTAAGATCAG AATTGGATCA CGCGGGGGCG CGCTCGGGAT 
    CGGGGGTTCC AAACACAGCT TCTTCGTTGA ATTTAAGTGG ATGTACTAAT 
    GGAGTCAAAG GGTGGCAAAA AGAAGTCTAG CAGTAGTCGT TCCTTGATGT 
    ATGAAGCTCC CCTTGGCTAC AGCATTGAGG ACGTTCGACC TGCCGGAGGC 
    GTGAAGAAGT TCCAGTCTGC TGCTTACTCC AACTGCGCGA AGAAGCCATC 
    CTGATAGCCC TTTCGGCTTC TCCATCCTAG TAGTTTAGGA TTTCTTGCAA 
    TTCCATTTTG GCACTTTTCT TCTGACCTAT TTCTCTGGCT GCTGCTTCCT 
    GATAATCGAC CAGTTCTCTA GTCTTGCTCC CTGCACTCCT CCCTCCTCCA 
    TCTCCGGCAC AGTGTTCTGA CCAACCTGCT CCAATGGGTG TCTTGTCTGC 
    TGCTGACCCT CCCCCAGTCT CAGCAATTGG GTTTGAGGGC TATGAGAAGC 
    GCCTTGAGAT CACTTTCTCT GAGGCACCTG TCTTTGCTGA CCCTGATGGT 
    CGGGGTTTGC GCGCCCTCTC CAGGGCCCAG ATTGACTCTG TTCTGGATCT 
    TGCACGGTGC ACCATTGTGT CCGAGCTGTC CAACAAGGAC TTTGACTCCT 
    ATGTCCTCTC TGAGTCCAGC CTGTTTATCT ATTCTGATAA GATTGTGATT 
    AAGACCTGTG GGACTACAAA GCTCCTGCTC ACAATTCCAA GGATTCTTGA 
    GCTTGCTGAA GGGCTTTCTA TGCCACTTGC TGCTGTGAAG TACTCCCGCG 
    GGATGTTCAT CTTCCCCAGT GCACAGCCTG CTCCCCACAG GAGCTTCTCT 
    GAGGAAGTTG CTGTCCTCAA CCGCTACTTT GGCCATCTGA AATCTGGTGG 
    TAATGCTTAT GTGATTGGAG ATCCAGCAAA GCCTGGCCAG AAGTGGCATA 
    TCTACTATGC TACTCAGCAC CCGGAGCAAC CTATGGTTAC CCTTGAAATG 
    TGCATGACCG GACTGGACAA GGAGAAAGCT TCAGTCTTTT TCAAGACTTC 
    TGCTGATGGT CACACATCAT GTGCTAAGGA AATGACAAAA CTCTCGGGCA 
    TCTCTGACAT TATCCCAGAG ATGGAGATCT GTGACTTTGA CTTCGAACCC 
    TGCGGCTACT CCATGAATGC AATCCATGGC TCAGCGTTTT CTACCATTCA 
    TGTGACCCCT GAGGATGGCT TCAGCTACGC CAGTTATGAG GTCGTGGGCT 
    TCGACGCCTC TACTCTTGCT TATGGCGACC TGGTGAAGAG GGTCCTCAGG 
    TGCTTTGGCC CTTCGGAGTT CTCTGTTGCT GTTACCATCT TTGGTGGGCA 
    TGGTCATGCT GGAACATGGG CAAAGGAGCT CAATGCTGAT GCTTACAAAT 
    GCAACAACAT GGTAGAGCAG GAGCTGCCCT GTGGTGGCCT CCTCATCTAC 
    CAGAGCTTCG ACGCTACTGA AGACGTACCT GTTGCTGTTG GGTCGCCCAA 
    ATCTGTTCTG CACTGCTTCG AGGCTGAGAA TATGGTGAAC CCTGCTCCTG 
    TTAAGGAAGG TAAACTGGGC AATCTTCTCC CCTGGGGAGA GGATGCGTTG 
    GAGGAGAATG ATGGAGTGTT TGATGAGTAA GATGGGACTT CTGGTGACGA 
    TTCGCTGCTT TGTTTTCATT CCGTGGCATT TTTATCTGTT GAGGTTGTCG 
    TTTGGTTATT CTGTGAAGCA GCCAGCCAGG CTATTAGTAT TTTCGCTTGT 
    AAGCATGTGT TCTGATCTTG GGACGTATGC TTGGTCTAAA TAATAATGGT 
    GAACTAAAAG CTCTAGGTGG TCAGCTGCGT CTGCCACAAT GAGCATGCGT 
    CGGGAGAAAT GTTGTCAAAA CATATGAATA AGTATTTGCG GGAAATTTCC 
    TTTGCCTTCT GCT

    Gene models with high sequence identity

    1. AT3G25570.2 [+] show detail - Adenosylmethionine decarboxylase family protein
      E-value: 1e-100; Score: 364.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPIR S-adenosylmethionine decarboxylase subgroup 2.6e-171
    HMMTigr S-adenosylmethionine decarboxylase subgroup 5.4e-190
    HMMPanther S-adenosylmethionine decarboxylase 2e-147
    Gene3D S-adenosylmethionine decarboxylase, core 2.4e-114
    HMMPfam S-adenosylmethionine decarboxylase 9.9e-131
    HMMPfam S-adenosyl-l-methionine decarboxylase leader peptide 3e-31
    superfamily S-adenosylmethionine decarboxylase, core 1.1e-125
    PatternScan S-adenosylmethionine decarboxylase, conserved site 0

    See the detailed result >

    AT3G25570.2

    Model type
    Protein coding
    Short Description
    Adenosylmethionine decarboxylase family protein
    Computational Description
    Adenosylmethionine decarboxylase family protein; FUNCTIONS IN: adenosylmethionine decarboxylase activity; INVOLVED IN: spermidine biosynthetic process, spermine biosynthetic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: S-adenosylmethionine decarboxylase, core (InterPro:IPR016067), S-adenosylmethionine decarboxylase, conserved site (InterPro:IPR018166), S-adenosylmethionine decarboxylase (InterPro:IPR001985), S-adenosylmethionine decarboxylase subgroup (InterPro:IPR018167); BEST Arabidopsis thaliana protein match is: S-adenosylmethionine decarboxylase (TAIR:AT3G02470.4).
    Link
    InterPro Scan - TAIR