K25846

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K25846

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • desaturated green (PATO:0001272)
    (Rosette leaf::Color::pale)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
fruit (PO:0009001)
  • decreased length (PATO:0000574)
    (Silique::Shape::short)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)
T2  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • increased size (PATO:0000586)
    (Cauline leaf::Shape::large)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K25846

Determination of introduced cDNA(s)

  • J023110K07 - Rice Full-length cDNAs - Original: J023110K07

    full reading [+] show sequence

    Nucleotide sequence: J023110K07 - full reading 
    GCCTCGCTTC TCCCGCCATC TTCTCCTCCT CCACGGCCAT GGCCGCCGTC 
    GCGTTCCGCT CGCTGCTACA CCCCGCCGCC GCGGCCCTCA CCGAGCGTGT 
    GCCACTGCCT CCCGCTCACC TACGGCTCCA GGGCCTTCAC CGCCACCGCG 
    TCGGCGTCCT CAACCTCTTC GTCGCCTCCG GTCATCGCCG CCGCATTCTG 
    CTTCCCCTCG CCGCCGCCGG TGGAGAGTTC TCTTCGGAAG AGGAGGAGTA 
    CGCCAACGAG GAGGAAGAAG AGGGGGAGGA GTACGTGGAG GAGGAAGAGG 
    AAGATGGGGA GGAGGAGGAG GCGGCGACGG TGGCGGCGCC TCGCGGATAC 
    TACCCGCCGA GAAGCCGGCC GGCGCTCGGG CAAGAGCCCG GCCGCCTCTT 
    CGTCGGCAAC CTCCCCTACA CCATGACCTC CGGCGAGATC TCCCAGACCT 
    TCTCCGAGGC CGGCAGGGTC GACAACGTCC AGATAATCTA TGACAAGGTC 
    ACCGACCGGA GCCGCGGCTT CGCCTTCGTC ACCATGGCCA CCGCCGAGGA 
    GGCTGCCACC GCCATCCAGA TGTTCAATGG GGCCCTGCTT GGAGGGAGGA 
    CTGCAAGGGT GAACTACCCG GAGGTGCCGC GGGGAGGGGA GAGGGCGGTG 
    GGATCGGCGG CGGCCACAAG GGAGAACAGG CGCGATGACG GCACATTCAA 
    GATCTATGCC GGGAACCTGG GGTGGGGTGT GCGTGCCGAT GCTCTGAGGG 
    CGGCGTTCGA GGGGCAGCCC GGCTTGCTTG ATGCTAGGGT CATCTTCGAG 
    CGCGACTCCG GTCGGTCCAG GGGTTTCGGA TTCGTCTCCT TCAGGACTGC 
    AGAGGATGCA CAGGCTGCAT TGGAGGCATT GGATGGAGTG GAACTGGAAG 
    GAAGGCCACT GAGGCTCAGT ATGGCGGAAC AGAACCCAAC AGCTGGTTCT 
    CCTAGCACAG TGCAGTCACA GGAGGAAGAA ACTGCTTCAG AATCATCTGA 
    TGCAGAGACA GAGCAGAGCA TTACCTCAGA ACCTTCTGAA GCTGAAACGG 
    AAGAGAGCAA CTTGCAGACA GCTGCCAGTT ATTAGTATCT AATTGATGGT 
    TGCACTGATT TACTTATTCT GCCATTCGGC ATTCCAATCT AAATTGTACT 
    TGTCCAATTG AAAATTTTGA CACAAGAGAT GCTAAAATGG GATATGAGCC 
    ATAGCCAATA GAATATTATT AGACATAGAG GTGCTCCGAG TTTCAGTTAT 
    TGCTGTAATA TATTGTGCAG AAATCTAAAG TGCAACTGTT TTGCTTCCT

    Gene models with high sequence identity

    1. AT3G52380.1 [+] show detail - chloroplast RNA-binding protein 33
      E-value: 3e-52; Score: 202.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan RNA recognition motif, RNP-1 18.547
    ProfileScan RNA recognition motif, RNP-1 17.489
    HMMSmart RNA recognition motif, RNP-1 3.1e-26
    HMMSmart RNA recognition motif, RNP-1 3.3e-23
    superfamily RNA-binding domain, RBD 8e-26
    superfamily RNA-binding domain, RBD 1e-21
    Gene3D Nucleotide-binding, alpha-beta plait 6.3e-27
    Gene3D Nucleotide-binding, alpha-beta plait 2.1e-22
    HMMPanther RIBONUCLEOPROTEIN, CHLOROPLAST 2.2e-58
    HMMPanther RNA-BINDING PROTEIN 2.2e-58
    HMMPfam RNA recognition motif, RNP-1 4.4e-20
    HMMPfam RNA recognition motif, RNP-1 3.6e-16
    Coil coiled-coil 0

    See the detailed result >

    AT3G52380.1

    Model type
    Protein coding
    Short Description
    chloroplast RNA-binding protein 33
    Curator Summary
    chloroplast RNA-binding protein
    Computational Description
    chloroplast RNA-binding protein 33 (CP33); FUNCTIONS IN: RNA binding; LOCATED IN: thylakoid, chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: chloroplast RNA-binding protein 31B (TAIR:AT5G50250.1); Has 514069 Blast hits to 499112 proteins in 22048 species: Archae - 10752; Bacteria - 302541; Metazoa - 101965; Fungi - 16255; Plants - 33338; Viruses - 35348; Other Eukaryotes - 13870 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR