K25905

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K25905

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K25905

Determination of introduced cDNA(s)

  • J013095B01 - Rice Full-length cDNAs - Original: J013095B01

    full reading [+] show sequence

    Nucleotide sequence: J013095B01 - full reading 
    CCCTTCCTTC CTTCCTTTGG ACACACCTCC CCATTTCCCT CCCTCTCTCC 
    TCTTCCACGA GCTCACCTCT CCTCTCCTCT CCTCTCCTCT CCCGCGAGCG 
    AGCGAGAGAG AGGCAGGCGG TGATGGATCT GGAGAGGTCG CCGCCGCCGC 
    CGCCGCCCGA GGGAGGAGGA GGAGGAGGAG GAGGAGGCGC GTCGTGCTCC 
    ATCTGCCTGG ATCCGGTGGT GGCCGGGGGC AGGTCCGTCG CCAGGCTGCA 
    ATGCGGGCAC GAGTTCCACC TAGACTGCAT TGGATCGGCA TTTAATGCAA 
    AAGGGGCCAT GCAATGCCCT AATTGTCGGA AGATTGAGAA AGGCCGCTGG 
    CTTTACGCAA GTGGGCACCA TCCATCTCCT GATATTGATA TAGGTGGCTG 
    GGTGACTGGT GAAACCTATG ACATCACCTC AGATATTCCA TTTGGTTTTC 
    AATGGTGCCC CTTTAGTGGA TTCACCCAGC TAGCATCTGT ATTTGAGGAG 
    GGTGAAGCTG AACAAACTTC TTATCATACA GTTGGAGATC ATTCAAATGC 
    TGCTAGCAGT TCTCTTGTTT GCCCTTACCT TGCACTGCGT GGTTTTCTCC 
    ATCCTGTGCA TGTCCCTTCT AGTTCTAGTT CTGGTGCCGA AAACAGTTCA 
    TTTCATCGGC ATCCAACTAG CTTGGAAGGC CATGCAGCCC ACGATTTGAG 
    CAATACACAA GTTTTCCATG CAACAGAGTC AAGAAATCAT GACAATGACC 
    ACCGCTATAT GAGCAATCTT CCTGTGTCAG GCATTCCTGA TCATTCTGTA 
    GCTCCATTTG GTATAGGATT GCCGAGATAT GACAGCAGCA GCCAACAGAG 
    AACAAGGCCA TATGCACATC ACCGTCCCCT AGTTCACAGG CCCACACCTC 
    GCAACGGAAG CAATATGGTT ACACCATTAG GGTCTGTGCC AGCTGTTATG 
    GCTGAGACTA GAGGCCATGG TCATGGTGCG AGGGGACACA TGTATCAACA 
    GTCAATGCAC TCATTGCAGA GCAGCCCATT CCCCCCTACA TCTAGAAGGG 
    TTAGGCCTAG GGCTTTAACA ATTACATCTT TCATCGCAGC ATCATCCTCA 
    GCTGAGATTG GAGGACACCA TGGCTTTGCT CCTCCTGTGA ACAGGTGCAA 
    TTCCTCGGAT GGTGAGGCTG TTTCTAGACC TGTTGATCGG CCATATGGGT 
    GGGGCCAGGA GGGCTTTACC CCATTTCCCT GGATCCCAGC TGACGGTGAA 
    TCTCACTGGT GGGGCACCTT CAATCCCATG CAGAACCATA CACATGGAGG 
    CTTTACTCGA AGACCCACCG GGGAGCGAAT GCCGCAGAGC CACCCAGATA 
    GTGGATATCA TTCCATGCAT CCTCAGAGGA TGCCGCCATT CTTGTAAAGG 
    TTATCTTCCT CGTTGTTTGT GTATATCTCA AAATTAGTTG GAATTATTTG 
    CTCCGAGAGA AAACGATGAA TCAGATGCTA TTGTTTCCAA GGAACTAAAT 
    GATGCTGCTT CTGTTGTCGG AATTTAGGGT TTTCTAGCTG GCAGCCCTAG 
    GTTTGATTAA GGGTTGTGCT TTATCCTATC TCATTTGTTG CAATGGGCAG 
    AAACTATTTG GAAACATAAG CTTAAACTGT ACCAAGCAGC GATTGTTGCC 
    ATTGAACATA GTTGTGATGC CATTGATGC

    Gene models with high sequence identity

    1. AT2G47700.1 [+] show detail - RING/U-box superfamily protein
      E-value: 1e-33; Score: 141.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Zinc finger, RING-type 4.2e-08
    superfamily RING/U-box 8.3e-13
    Gene3D no description 9.4e-06
    ProfileScan Zinc finger, RING-type 12.179
    HMMPanther RING FINGER CONTAINING PROTEIN 0.00089
    HMMPfam Zinc finger, C3HC4 RING-type 2.3e-06

    See the detailed result >

    AT2G47700.1

    Model type
    Protein coding
    Short Description
    RING/U-box superfamily protein
    Computational Description
    RED AND FAR-RED INSENSITIVE 2 (RFI2); CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G05545.1); Has 457 Blast hits to 456 proteins in 77 species: Archae - 0; Bacteria - 0; Metazoa - 168; Fungi - 17; Plants - 198; Viruses - 0; Other Eukaryotes - 74 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR