K25915

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K25915

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K25915

Determination of introduced cDNA(s)

  • J013167O21 - Rice Full-length cDNAs - Original: J013167O21

    full reading [+] show sequence

    Nucleotide sequence: J013167O21 - full reading 
    TTGGCACTGT CAGATTCTGT ATCCAGGGTG AATGGGTGGC AGTGGTGGTT 
    GATGATTGGA TCCCCTGTGA GTCTCCGGGG AAACCGGCAT TTGCTACTAG 
    TAGAAAGCAA AATGAGCTGT GGGTATCCAT TCTTGAAAAA GCTTATGCAA 
    AGCTTCATGG CTCTTATGAG GCATTGGAGG GTGGGCTTGT GCAAGATGCT 
    CTAGTGGATC TCACAGGAGG AGCTGGTGAA GAGATTGACA TGCGGAGCCC 
    CCAAGCGCAG ATTGATCTTG CTAGTGGAAG ATTGTGGTCT CAGTTGTTGC 
    ATTTTAAACA AGAGGGCTTT CTTCTTGGTG CTGGAAGTCC TTCTGGCTCG 
    GATGCTCATA TTTCATCAAG TGGCATTGTT CAGGGACATG CTTACTCAAT 
    TTTGCAGGTA AGAGAAGTTG ATGGCCATAA GCTCGTGCAA ATTAGAAATC 
    CGTGGGCAAA TGAAGTTGAA TGGAATGGTC CGTGGTCAGA CTCATCACAA 
    GAGTGGACTG AGCGAATGAA GCACAAACTT AAGCATGTTC CACAGTCAAA 
    GAATGGGGTA TTCTGGATGT CTTGGCAAGA TTTTCAGATC CACTTTCGGT 
    CAATATATGT CTGTCGTGTT TATCCACCCG AGATGCGTTA CTCTGTCCAT 
    GGCCAATGGC GTGGTTATAG TGCAGGTGGT TGCCAAGATT ATGACTCATG 
    GCATCAAAAT CCTCAGTACC GGCTTAGAGT AACAGGACGG GATGCACTGT 
    ATCCTGTACA TGTATTTATT ACCCTTACGC AGGGTGTTGG TTTTTCTAGA 
    AAGACAAATG GTTTCCGGAA CTATCAATCT AGCCATGACT CTTCTATGTT 
    TTACATTGGA ATGAGGATAC TCAAGACACG GGGCTGCCGT GCTGCTTACA 
    ATATCTACAT GCATGAATCA GTGGGTGGAA CAGATTATGT TAACTCAAGG 
    GGGATATCAT GTGAATTAGT GTTGGAGCCT TATCCAAAAG GATACACAAT 
    TGTGCCCACA ACCATCCATC CTGGAGAGGA AGCACCTTTT GTTTTATCAG 
    TTTTTACAAA AGCACCAATC AAGCTAGAAG CTGTTTAATG CAAGATTCAT 
    ACTAGATGTG TTCGCTGCTG GTAGCTGTGC CTTGCTGTTG CTGGCCCAGG 
    CTCCTTTGGG GTTCAAGTGA TGCAGATTCC AGCTGTGGGT TCAAGAGGAT 
    CAGATAATGG TGTTTGCTGC AGCAATATGC CGGTACCTGG GAGATATGAA 
    GCAGCAGCTC TGCTCTTGAA CCTGAACATT CTGGGCTTCA TCAGACGCTA 
    CATGCAACCG CATAAGCTTG ATTGCTTCCT AACGTGACAG GAAAGGCAAT 
    CTTTCTGTCA GCAGGCATGG TGTTGATACA TCAGAATCAT TTGATCGCCG 
    TGCATGACTC TGGATGTTTT CTAGTCGATG CTTGTAGATA GTGGTGGCAA 
    CTAACATTTA GACCTGGTAG CCCCATCCCG TGTATAGGTA TCCCATGTCA 
    CCGTGTACAT ACTATAGAAT TAGATGAGTT AACCTTGTGG TGTCGTTTCC 
    TGTTAGCGAA ATAGAGCTCT TGTGCAGCTG GGAAATACCA TTTTAGCATG 
    CTGCAGTTTT GCTGATCAAG GCGAGCAGTC GTCGGCCATA GCGTTTTCAT 
    TGATTGCCTG TATGTAATCG AAATCTGATC TCATTCAATG GAAGCTATTT 
    TTTGGTACC

    Gene models with high sequence identity

    1. AT1G55350.5 [+] show detail - calpain-type cysteine protease family
      E-value: 0; Score: 681.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Peptidase C2, calpain 9.1e-55
    HMMPfam Peptidase C2, calpain 2e-27
    HMMSmart Peptidase C2, calpain 1.3e-17
    HMMSmart Peptidase C2, calpain 1.8e-34
    FPrintScan Peptidase C2, calpain 6.6e-29
    FPrintScan Peptidase C2, calpain 6.6e-29
    FPrintScan Peptidase C2, calpain 6.6e-29
    FPrintScan Peptidase C2, calpain 6.6e-29
    superfamily Cysteine proteinases 8.9e-73
    superfamily Peptidase C2, calpain 6.5e-31
    HMMPanther CALPAIN-RELATED 0
    HMMPanther CALPAIN 0
    ProfileScan Peptidase C2, calpain 44.895

    See the detailed result >

    AT1G55350.5

    Model type
    Protein coding
    Short Description
    calpain-type cysteine protease family
    Curator Summary
    Similar to maize DEK1, a gene encoding a membrane protein of the calpain gene superfamily required for aleurone cell development in the endosperm of maize grains. A key component of the embryonic L1 cell-layer specification pathway.
    Computational Description
    DEFECTIVE KERNEL 1 (DEK1); FUNCTIONS IN: cysteine-type endopeptidase activity, calcium-dependent cysteine-type endopeptidase activity; INVOLVED IN: cell fate specification, embryo development ending in seed dormancy; LOCATED IN: plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C2, calpain, domain III (InterPro:IPR022683), Peptidase C2, calpain, large subunit, domain III (InterPro:IPR022682), Peptidase, cysteine peptidase active site (InterPro:IPR000169), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Peptidase C2, calpain, catalytic domain (InterPro:IPR001300), Peptidase C2, calpain family (InterPro:IPR022684).
    Link
    InterPro Scan - TAIR