K25916

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K25916

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K25916

Determination of introduced cDNA(s)

  • J023036G13 - Rice Full-length cDNAs - Original: J023036G13

    full reading [+] show sequence

    Nucleotide sequence: J023036G13 - full reading
    GTCTCTCATC GCCACCACCA CCTCCCACTC CAAGACGCTA GCTGCATTGT 
    AGTGAGAGAG AGAGGCGGCC ATGGCGCTGG CGTCGCTGCC GAAGGTGGTG
    ATGGGGTCGG TGGCGTTCGG TGTGTTCTGG ATGCTGGCGG TGTTCCCGTC
    GGTGCCGTTC CTGCCGATCG GGCGGACGGC GGGGGCGCTG CTGGGCGCGG
    TGCTGATGAT CGTGTTCCAC GTGATCAGCG CCGACGACGC CTACGCCTCC
    ATCGACCTCC CCATCCTGGG CCTCCTCTTC GCCACCATGG TCGTCGGCGG
    CTACCTCAAG AACGCCGGCA TGTTCAGGCA CCTGGGCCGG CTGCTGGCGT
    GGCGGAGCCA GGGCGGGCGC GACCTCATGT GCCGCGTCTG CGTCGTCACC
    GCGCTCGCCA GCGCGCTCTT CACCAACGAC ACCTGCTGCG TCGTCCTCAC
    CGAGTTCGTG CTCGAGCTCG CCGCCGAGCG CAACCTCCCG GCGAAGCCGT
    TCCTGCTCGC GCTCGCCACC AGCGCCAACA TCGGCTCCAG CGCGACGCCC
    ATCGGCAACC CGCAGAACCT GGTCATCGCC TTCAACAGCA AGATCTCCTT
    TATTTCCTTC CTCCTCGGCA TCCTCCCCGC CATGCTCGCC GGCATGGGGA
    TCAACATGCT CATGCTGCTC TGCATGTACT GGAAGGAGCT CGACGGCGGC
    GCCTGCAGCC CCGACGAGGT CGCCGCCGGC AAGCAGATGG AGGCCATCGA
    GGAGGGCCGC CGCACGGCGC TCAACAACAA CAAGAAAGAC GACGGCGACG
    CCGCCACCCC CGCATCGCCG GAGGACGACG ACGGCGGCGA CGCCGAGTCG
    ATGATGTCGG AGAACATCTC GACGAAGCAC CGGTGGTTCA TGCAGTGCTC
    GGAGCACCGG CGGAAGCTGT TCCTCAAGAG CTTCGCGTAC GTGGTCACCG
    TCGGCATGCT CGTCGCCTAC ATGCTCGGCC TCAACATGTC GTGGACCGCC
    ATCACGACCG CCATCGCCCT CGTCGTCGTC GACTTCCGCG ACGCCGAGCC
    ATGCCTCGAC AAGGTGTCGT ACTCGCTGCT GGTGTTCTTC TCGGGGATGT
    TCGTGACGGT GAGCGGGTTC AACAAGACGG GGCTACCCGG GGCCATCTGG
    AACGTGATGG CGCCCTACTC AAAGATCAAC CACGTCACCG GCGTCACCGT
    CCTCTCCGTC ATCATCCTCC TCCTCTCCAA CCTCGCCTCC AACGTCCCCA
    CCGTGTTGTT GATGGGGGAT GAGGTGGCGG CGGCGGCGGC GACGATATCA
    CCGGCGGCGG TGACGCGGTC GTGGCTGCTG CTGGCGTGGG TGAGCACGGT
    GGCGGGGAAC CTGTCGCTGC TGGGGTCGGC GGCGAACCTG ATCGTGTGCG
    AGCAGGCGAG GCGGGCGACG CGCAACGCCT ACGACCTCAC CTTCTGGAAC
    CACGTCATCT TCGGACTCCC ATCCACCCTC GTCGTCACCG CCATCGGCAT
    CCCTCTCATC GGCAAGATCA ACATCTAGTA TTCATTAAAT TAATTAATTA
    ATATAATCCG GCTAGCTACT ATCTACAACG ATCAGAAGAA GGCAGAATGA
    TCGAGCATGC AAGAATTCAT GCAAATTACA AGGGATGTGA TATGATCATA
    TTAATCCAAG GAAGCTAGTA TGATGATTAA GTTTGTGATC AAGCCGTACT
    ATGTGCATGC CAATGCATGC ATGTGTTCAA GTGTACACTA TGCTTGGTCT
    CAAGTGGATC AATTATATTG GTGCCATGCT CTGGGATAAT TAGTTAATTA
    GTACTTATGA TAAGCTAGAG AGGAGGATGC ATTATATTGG TGCATGGTAA
    TAAGGCAAAT GAACAGCAGA ATGCATGTAT ATATGTACTG TATCCCTGTT
    GCCAGCTGGT CTCTGTTTGA ATGAAGTTGA TAGCAACAAA GCTAGCACTA
    GCGAATGAGC TAGTGACTCA AGTACGCATG CCGGATTACC TCATTGCTCC
    AAACTTGCAA TCAGTTTTGA ACTTTTAATA AAGTTAATTT GGCTTTGTGC
    ACTTGTC

    Gene models with high sequence identity

    1. AT1G02260.1 [+] show detail - Divalent ion symporter
      E-value: 1e-140; Score: 497.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Divalent ion symporter 6e-101
    HMMPanther ARSENITE TRANSPORT PROTEIN 1.5e-193
    HMMPanther CATION TRANSPORTER RELATED 1.5e-193

    See the detailed result >

    AT1G02260.1

    Model type
    Protein coding
    Short Description
    Divalent ion symporter
    Computational Description
    Divalent ion symporter; FUNCTIONS IN: citrate transmembrane transporter activity, transporter activity; INVOLVED IN: citrate transport, transmembrane transport; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Divalent ion symporter (InterPro:IPR004680); Has 9789 Blast hits to 6672 proteins in 1812 species: Archae - 302; Bacteria - 8135; Metazoa - 259; Fungi - 87; Plants - 203; Viruses - 2; Other Eukaryotes - 801 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR