K25918

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	decreased length (PATO:0000574) (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K25918

Determination of introduced cDNA(s)

J013056M21 - Rice Full-length cDNAs - Original: J013056M21

full reading [+] show sequence

GGGCTTCCAA AGCAAACGGA GGAGGAACTG AGGAAGACGC CTGGGCTGAG 
AACCCGAAGA AGCCCGACGA CTCCGGAATC GGGGGCTCGG GCAGTCGAGC 
TCACCGCGCG CGCGCGTCCC GTCTCGCCGA GTAACAAAAG GACACTATGA 
GCTCCGCAAG CGGTGTGAAC AATGGTGATG GAAAAGAAGC GGCACTGTTT 
GAGCAGCGGC TATCCAAGAT TGGTGAAGTT AGAGCTGCCC TAGGACAACT 
ATCAGGAAAA GCTGCGCTAT ATTGCTCAGA TGCTTCGATT GCGAGGTACC 
TGGTAGCGAG GAACTGGGAA GTGAAGAAGG CCACGAAAAT GCTGAAGAAA 
ACCTTGAAAT GGCGTTCAGA GTATAAGCCA GATGAGATCC GTTGGGATGA 
GATAGCAAAC GAAGCTGCAA CTGGAAAAAT CTACCGAACT GATTACTTTG 
ACAAGAGTGG ACGGAGTATT CTTGTCATGA GACCTGGAGT TCAGAATACC 
AAGAAGGCCA AGGGGCAGAT CAGATATTTG GTATACTGTA TGGAGAATGC 
AATTCTGAAT CTTCCGCATG ACCAGAGTCA GATGGTTTGG CTCATTGATT 
TTGCTGGATT CTCATTATCT AACATATCAC TTCATGTGAC AAAGTTGACA 
GCAGATGTCC TACAAGGTCA CTATCCTGAA AGATTGGGTG TTGCAATTCT 
TTACAATGCT CCTAAGTTTT TTGAGTCTTT CTGGAAGATC GCAAGCCCCA 
TTCTTGAGCC AAAGACTTTC AACAAGGTCA AATTTGTATA CCCAGATAGG 
CCTGAGACTA ACAAGATCAT GGAAGACCTT TTTAACATGG AAGAATTAGA 
ATCTGCATTT GGTGGCAAAA ACCAGGCTAC TTTTAACATA AATGATTATG 
CTGCAAGGAT GAGAGGAGAT GACATCAAGA TGCCATTGTT CTGGAGTCCT 
GAAAATTCTG CTCTTGCTTC AGAGCCATAT GTGATGGTGA ACAAGGACAT 
GGCACAAGAA GGTAGTTCAG GTTTGAAGAG TGAAGAGACT GCATCTGAAA 
AGAGGGAAGA AACAGATACT GAATCTGAAA ACAGGGAAGA AACAGAGAGT 
GAATCTGAGA GGGCAGAAAT AGACTCTGTA TCTGGGAAGA GGGAAGAAAC 
AGTGGCTGTA TCTGACAAGA GAGAAGAAAA AGAGACTGAA TCTGAAAATG 
GGAAAGCCGC AGTGACTTCA TCAAACGGAG TTGAGCTGAC AAGCTTGCCA 
GGCGAAGGTA AAGGTATAAC CCCGGCAGAT TGAAGTGTCT GTTCATCGTC 
TGATCCATGA ATACCACCAT GGAAAATGCA AGCCAACTGT TGATATGAAC 
TCCAACACAG TGAATTCTCA GCTCTCACCA AGAGATGAAC ACCAAATGTT 
AACTAGAAAC GCTTTAACAC ACAGCAGGAA TGTGTTGCCT GACTTGTTTT 
GTAGTCGGCA CCACCATCCC AACCTTCGTG ACCTCATTTG AGAACCCTTT 
CGCAACAATA TCTGCCAGAT GATAAATAAC AGCACGACAC TTTGTTGC

Gene models with high sequence identity

AT1G22180.2 [+] show detail - Sec14p-like phosphatidylinositol transfer family protein
E-value: 1e-84; Score: 310.00

InterPro Scan Digest

Program	Description	E-value
Coil	coiled-coil	0
HMMSmart	Cellular retinaldehyde-binding/triple function, C-terminal	2.5e-39
HMMPanther	PHOSPHOGLYCERIDE TRANSFER PROTEIN-RELATED	9.3e-140
HMMPanther	RETINALDEHYDE BINDING PROTEIN-RELATED	9.3e-140
Gene3D	Cellular retinaldehyde-binding/triple function, C-terminal	2.8e-39
HMMPfam	Cellular retinaldehyde-binding/triple function, C-terminal	1.6e-26
HMMPfam	Cellular retinaldehyde-binding/triple function, N-terminal	0.00000011
superfamily	Cellular retinaldehyde-binding/triple function, C-terminal	1e-42
superfamily	Phosphatidylinositol transfer protein-like, N-terminal	6.2e-16
ProfileScan	Cellular retinaldehyde-binding/triple function, C-terminal	17.762

See the detailed result >

AT1G22180.2

Model type: Protein coding
Short Description: Sec14p-like phosphatidylinositol transfer family protein
Computational Description: Sec14p-like phosphatidylinositol transfer family protein; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251), Cellular retinaldehyde-binding/triple function, N-terminal (InterPro:IPR008273), Phosphatidylinositol transfer protein-like, N-terminal (InterPro:IPR011074); BEST Arabidopsis thaliana protein match is: Sec14p-like phosphatidylinositol transfer family protein (TAIR:AT4G08690.1); Has 2763 Blast hits to 2754 proteins in 228 species: Archae - 0; Bacteria - 0; Metazoa - 989; Fungi - 606; Plants - 846; Viruses - 0; Other Eukaryotes - 322 (source: NCBI BLink).
Link: InterPro Scan - TAIR