K25931

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K25931

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased width (PATO:0000600)
    (Seed::Shape::wide)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K25931

Determination of introduced cDNA(s)

  • J013067E08 - Rice Full-length cDNAs - Original: J013067E08

    full reading [+] show sequence

    Nucleotide sequence: J013067E08 - full reading 
    GACTAGTCAT TTCCACACCC GTTATTCCCA ACCGCATCGC GTCGCGTCGC 
    CGGCTCAAGC AAACGCACCG GCGCCTCTCG CCGTCGCCGT CGCCGCCATC 
    TACCAGCGCC TTCTTCTCCG GCGCATCCGT TTCACGCCCT CTCACTTCCT 
    CGCCGGTTTC CACGGAGGAG GGAGCGATCC AATCCTCCGA GGAGGCGGCG 
    GCGGCTGCGG GATCGCGGGA TTCGTCGTTC GATCTGTGTG GCTGCGGGTG 
    CGGGGGGGTG TGGTCGATGG CGGCGGCGGC GTCCAGGAAG GAGGAGGAGA 
    GGAACGAGCG GGTCGTGAGG GGGCTCCTCA AGCTGCCGCC CAACCGCAGA 
    TGCATCAACT GCAACGGCCT CGGGCCGCAG TACGTGTGCA CGAGCTTCTG 
    GACATTCGTC TGCATCTCCT GCAGCGGCAT CCACCGTGAG TTCACGCACC 
    GTGTGAAGTC AGTATCTATG TCGACGTTCA CCACGCAAGA GGTCGAGGCC 
    CTCCAGAACG GTGGGAATCA AAGAGCCAGA GAATCGTTCT TAAAGGAATT 
    TGATGCTCAG AAAATGAGGC TACCTGATAG CAGCAATGTC GACAGTCTTA 
    GGGAATTCAT AAAAGCTGTT TATGTGGAGA GAAGGTATGC TGGTGGAAGG 
    TTTTCTGAAA GGCCTCCAAG AGATAAACAG AATCAAAAGA ACAATGAACA 
    AGAGCATAGA AGGGCTAGTT CGTACCATTC ATTTTCTCAG AGCCCACCTT 
    ATGATTACCA ATACGAAGAA AGACGCAATG GCAAGCAATC CGTGATGCTA 
    ACTAGGAAAC CTGGTTCAGA TAGGGGGCAT GATGGGAAGA TGTCTGGATT 
    TGCTTACAGT CCACAGAGCC TGCATGAGAG GATGTCAGAA GACCGATTTG 
    CCAATGAGAA TTCTGGACCA AGAATTTCTG ACTGCTCAGG GTCAAGCATC 
    AGTAATACAT TTAGAACGAC ACCACACTCA CCGAATTTCC TTGATAAAGG 
    GTGTTCCAGC CCCTCTATGC AACAAAATCA ATCAAACATA CAGGCTTCTA 
    GTGGAATCAC TCAATCTGAG AGAACTATAT CAACAGGAAA CATAGATTCG 
    TCATCTACAA AATCAAGCAA ATCAAGCTTA GCTGATATGT TTTTTGAATC 
    TGATATTGCT CATAGAACTC AGCAAACGAA GGATTGCATT ACTCCAAGTT 
    TCACAGCTTT CTCTGATGTT GCCAACATTG CACAGAAAGA TCTCCTTAAT 
    GAGCCTGTTG CGCAGCAACA ACCTGTAACT GGTTTGGATC AACCAGTAGA 
    TTTTTTTGCT AGCATGCCTC CGGCAACTCC ATCCACTGAT AGAATGCTCA 
    CAGCAGCTCC ATCAATGGAC AATGCTGGGT GGGCTACATT TGACACACCA 
    CCAGAAGAAA AGCAACCTGG AGTGATTGGG CTTTCTGGCA TTTCCGTAAT 
    GGATAAACAT GCTTTGAGTG GTGATTTGTT TTCGTTTGAA CCAAATAATG 
    ATCAACCAAC GTGGCTCCAG AGCTCAAAGA CATCAAAAAA TAATGCTTCT 
    GTGACTGATC AGTCTGATGT ACCTTGTAAA TATACATCCT CTGATGCAAG 
    TAATTCTCAG GCTTGGAGTG CTTTTGAGGC CAAAAGTGTT AGCACCCAAC 
    AAGCCTCGCC AGATCTTTCA CTAATGAGTT CTATAGAACC TAAAGAACCA 
    ATTGATGAAA ATAAATTGCA GCTCTGGCAT TCATTCGATG ATGCAAGTGA 
    GACTATGACT CTCAATCTGT CCAATGCTCA GCTGCAAACT AATGAGCACA 
    AGAATGTTGA TAACAATTCC CTAACAACAA GCAATCCATT TACTTGCTCC 
    ATAACGTCAA AGGTACCCCT TTGCTCCATA ACAACCTAAT ATATTTTTCC 
    GTCATGTAGG AATCTCGTGG TAATGATTCC CAAGAAATTT TCATGGGTGG 
    ATTAGCTCCT AGCGAACCCT TTGCTCCATT CCCTGAGCCA TCACTGTTTG 
    CTACTACTTC CGTGGGAGAA GCCTCTGTAC AGCAGATGCC GTTGAATCCA 
    TTTGATCTTC CATTTGATGC TGACTCGGAT TCTCCAGATA TGTTTATGGA 
    TGTGACAGCG TTGCAAGCGG TTTTGCCTAA TGCTGACCTA TCAACTTCTT 
    TCGTTGATGG TTTGCCGGAA ACATGGTTCT CCAACAATGC GTCCGCTTAT 
    GTTCCACCGG GGTCACATGG TGGACCTCCA TGCCTTGTCG AGCAAATCCC 
    CAACTCTGCA CTCAGGAACA TAACATTGAG CGCTGTATCA ACTGGAAATC 
    CTTTTGCATA GAAAATGGCC TCAGCCTTCA GTTTACAAAC TAGAAAAGCT 
    AAAGGCTCGG TAAAATCCTT TTCCAAAAAG CAGCTCACCA GTCACCACCA 
    AATTACAAAT TGGTGTGTGA TTCCGTCCTT TGGTTAGTGA AACTATGCAT 
    ATGTACAAAC AAGGAGGAAC ATCGTGAAGG GGACTGTGCG GAGAAATTTT 
    GCACACATAT GGTACAAACC AAGGAGGAAC ATCATGAAGG GGACTATACG 
    GATAGGATAG GATGCGACTC GTTGGTTGTG GCAAATGACA AGCTCGGATG 
    TGGGAAATGG TAGACTTTCT CACAAATCTT ATCAACAACT GAAAATCAGT 
    TTTAGTGTAT TTTCTTTAGG CAAATGTGTA CGGATACCAT TGCTCCTTGG 
    AGCTATAGTG CAGCATGTTA GCTGCGGAGT TCACTGGAAA GATTTTTTTT 
    TTTTTTGTGG AAGTGATTAT TTAGATTCCT CGGTATATGG ATCAGTCCCA 
    GAATCCTATT TTCAGTTTTT TTTGGACTAA ACTAACATTA TAGATTGTCT 
    TCATTTCCAC AATAGATCTG AGAATTCGTT TTTTTTAACA AAAATCTAAG 
    AAGGATTCAC TCC

    Gene models with high sequence identity

    1. AT1G08680.2 [+] show detail - ARF GAP-like zinc finger-containing protein ZIGA4
      E-value: 2e-84; Score: 311.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Arf GTPase activating protein 5.8e-33
    ProfileScan Arf GTPase activating protein 17.402
    HMMPanther HIV-1 REV BINDING PROTEIN, HRBL 1.5e-72
    HMMPanther CENTAURIN/ARF 1.5e-72
    HMMPanther HIV-1 REV BINDING PROTEIN, HRBL 0.000021
    HMMPanther CENTAURIN/ARF 0.000021
    FPrintScan Arf GTPase activating protein 0.00000000014
    FPrintScan Arf GTPase activating protein 0.00000000014
    FPrintScan Arf GTPase activating protein 0.00000000014
    HMMPfam Arf GTPase activating protein 4.5e-27
    HMMSmart Arf GTPase activating protein 3.6e-19

    See the detailed result >

    AT1G08680.2

    Model type
    Protein coding
    Short Description
    ARF GAP-like zinc finger-containing protein ZIGA4
    Curator Summary
    A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes. AGD14 belongs to the class 4, together with AGD15.
    Computational Description
    ARF GAP-like zinc finger-containing protein ZIGA4 (ZIGA4); FUNCTIONS IN: ARF GTPase activator activity, DNA binding, zinc ion binding; INVOLVED IN: regulation of ARF GTPase activity; LOCATED IN: nucleus, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Arf GTPase activating protein (InterPro:IPR001164); BEST Arabidopsis thaliana protein match is: NSP (nuclear shuttle protein)-interacting GTPase (TAIR:AT4G13350.2); Has 3491 Blast hits to 2950 proteins in 241 species: Archae - 0; Bacteria - 7; Metazoa - 1485; Fungi - 538; Plants - 477; Viruses - 2; Other Eukaryotes - 982 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR