K25934

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K25934

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K25934

Determination of introduced cDNA(s)

  • J013049O12 - Rice Full-length cDNAs - Original: J013049O12

    full reading [+] show sequence

    Nucleotide sequence: J013049O12 - full reading 
    TGCCTCGTCA AGTCAGTCTC CCTCTCCCCG CGCGGCCGCG CCCCACCCAC 
    ACAAACCCTC CACCACCACC ACCCACCCAC CCATCCGTTG GCCACCGGCG 
    GCGTGGGCGG AGGGCGGCGG GCCGGCGGCC ATGGGGAAGA ACCTGCGTAT 
    CAAGACCGGC AACCGCGCCC CGCTCCTCGC CCAGGGGGAG ACGTCGAGGG 
    CGCTCTCCGA TCTCGAGGAG GGGAGCAACG TCCAGCCGGA GAACGTCGGG 
    TTCTGCCGCG TCATCAAGTT GGCGAGGCAT GACGCGGGGA AGCTGGTTAT 
    TGCCACCATG GCGCTGCTCG TCGCTTCGCT CAGTAACATT CTCGTTCCGA 
    AATATGGTGG AAAGATAATT GACATTGTTT CAAGAGATGT TCGGCGTCCA 
    GAAGATAAAG CTCAAGCCCT AGATGATGTG ACGGGCACAA TATTGTATAT 
    TGTCATAATC GTCGTAACTG GTTCAGTTTG CACAGCGCTT CGGGCATGGC 
    TATTCAATTC TGCTAGTGAG AGAGTAGTTG CTCGACTGAG GAAGGACTTG 
    TTTAGTCATC TAGTAAATCA GGAAATAGCA TTTTTTGATG TCACTAGAAC 
    AGGAGAGCTA TTAAGCAGGC TTTCTGAAGA TACGCAAATA ATAAAGAATG 
    CTGCTACAAC TAACCTTTCA GAAGCATTGC GCAATATTAC TACTACGTCT 
    ATTGGTCTTG GTTTTATGTT TGCAACTTCA TGGAAATTAA CATTGCTGGC 
    ACTTGTAATT GTTCCGGTTA TATCAATTGC TGTGCGCAAA TTTGGACGCT 
    TTCTTCGTGA ACTTTCACAT CAGACACAGG CAGCAGCTGC TGTTGCTTCA 
    TCCATAGCCG AGGAATCTTT TGGTGCCATT CGCACAGTAA GATCGTTTGC 
    TCAGGAGAGT CATGAAGTCT TACGATATGG TGAGAAAGTA GATGAGACAC 
    TGAAACTCGG TCTCAAGCAA GCTAAAGTTG TTGGCATGTT TTCTGGAGGG 
    CTCAATGCAG CATCAACCCT ATCAGTGGTC ATTGTAGTTA TTTATGGCGC 
    TAACTTAACC ATCAACGGTT ACATGACAAC TGGTTCTCTC ACATCGTTCA 
    TTTTGTACAG CCTTACAGTT GGGTCGTCAG TCTCTGCCTT GTCAGGACTA 
    TACACAACTG TAATGAAAGC ATCGGGCGCA AGCCGACGAG TATTTCAACT 
    TCTGGACCGT GTTTCCTCAA TGGCAAATTC CGGGGACAGA TGCCCAACAA 
    ATGAAAATGA TGGGGAGGTT GAGCTCGACG ATGTCTGGTT TGCATATCCC 
    TCTCGGCCTT CTCATATGAT TCTGAAGGGA ATAACGTTGA AGTTAACACC 
    AGGTTCAAAG GTAGCTCTTG TTGGGCCAAG TGGTGGTGGG AAAACTACAA 
    TAGCAAATTT AATTGAACGG TTTTATGACC CTCTAAAAGG AAGAATCTTG 
    CTTAATGGAG TGCCTTTGCC AGAGATTTCA CATCAGTTTC TCCACAGGAA 
    GGTTAGCATT GTTAGTCAGG AGCCTGTGCT CTTTAACTGC TCCATCGAAG 
    AGAATATTGC TTACGGATTA GAGGGCAAAG CCAGCTCTGC TGACGTTGAG 
    AATGCAGCTA AAATGGCAAA CGCCCACAAT TTCATATGCA GTTTTCCAGA 
    CCAATACAAG ACTGTAGTTG GAGAGCGAGG CATCAGGTTA TCAGGTGGGC 
    AGAAGCAGAG AGTCGCCATT GCAAGAGCTT TGCTTATGAA CCCTCGAGTG 
    CTCCTCTTGG ATGAAGCTAC CAGTGCACTA GACGCTGAAA GCGAGTATCT 
    TGTTCAGGAT GCAATGGACT CTCTGATGAA AGGGAGGACC GTGCTTGTGA 
    TAGCTCACCG GCTATCCACC GTCAAGAGCG CCGACACCGT CGCCGTCATC 
    TCCGACGGCC AGATAGTGGA GAGCGGCACG CACGACGAGC TCCTCAGCCG 
    CGACGGCATC TACACGGCCT TGGTGAAGAG GCAGCTGCAA GGGCCAAGGT 
    TCGAAGGCAC CAGCAACGCA ACAGCCGAGA TAGAACCCAT AAGCAATGGC 
    CAATAGACAA ATATAGCCTC TTCTGCATAG TACTTGATTT TTGTCCCTTC 
    TCCGGGTAGG TGGACACCGT TTCCTGATGA TCCACTGAAT GTAAACGGAT 
    ATGAATGCAT CCACTCTGAA AATGCCACGC AGTCCCGCAC AACAGTACAA 
    ACACATTCTA ATTGTCACGA GCTGCTGCTG TGTCTTACAC AATTAACTCG 
    CTTATTTTTT TATAGAATGT AATTATGCCT TGATGGCGTG ATGTTGCGCG 
    GATGGGTAAT GACCGCAATC AATATTGTGT TGCTTGATTG CTTCTC

    Gene models with high sequence identity

    1. AT5G39040.1 [+] show detail - transporter associated with antigen processing protein 2
      E-value: 0; Score: 886.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily ABC transporter, transmembrane domain, type 1 4.3e-77
    superfamily P-loop containing nucleoside triphosphate hyd 1.7e-71
    ProfileScan ABC transporter-like 26.891
    ProfileScan ABC transporter integral membrane type 1 57.377
    PatternScan ABC transporter, conserved site 0
    Gene3D no description 2.1e-80
    HMMSmart ATPase, AAA+ type, core 1.1e-17
    HMMPfam ABC transporter, transmembrane domain 4.7e-55
    HMMPfam ABC transporter-like 3e-21
    HMMPfam Protein of unknown function DUF1602 2.1e-11
    HMMPanther ATP-BINDING CASSETTE, SUB-FAMILY B, MEMBER 10 3.7e-292
    HMMPanther ATP-BINDING CASSETTE TRANSPORTER 3.7e-292

    See the detailed result >

    AT5G39040.1

    Model type
    Protein coding
    Short Description
    transporter associated with antigen processing protein 2
    Curator Summary
    Encodes a member of TAP subfamily of ABC transporters that is located in the vacuole. Mutants are hypersensitive to aluminum and the gene product may be important for intracellular movement of some substrate, possibly chelated Al, as part of a mechanism of aluminum sequestration.
    Computational Description
    transporter associated with antigen processing protein 2 (TAP2); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances, transporter activity; INVOLVED IN: response to aluminum ion; LOCATED IN: vacuolar membrane, plasma membrane, vacuole, plant-type vacuole; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane domain, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane domain (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: P-glycoprotein 11 (TAIR:AT1G02520.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR