K25939

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K25939

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K25939

Determination of introduced cDNA(s)

  • J013111B10 - Rice Full-length cDNAs - Original: J013111B10

    full reading [+] show sequence

    Nucleotide sequence: J013111B10 - full reading 
    GATTGAGTTC TTTGGACGTT TCCCCATCCA GAAAAAAAAA TCTTCTCAGT 
    TACAGGATCC ATCCTTAGGT GTTAGAGGCA AACCCCTCTT CTAATTCTCT 
    CAGAGTCCTC CATAGTTCTT TCTGCTCCTT TTTTCTCATG ACCACAATGC 
    TTGCAGCTAG CTCTGTAGTG AACAGCAACC TTCCTTGCTC ATCAAGGATA 
    TCCTCCTGCT CAGACTTCAC ATCTGGCTAC TCCTGGCGTC CTATAGAGGC 
    TGCAAAACTC TGCCGGACAC GAGCTGTGCG CTCGCTGCAG ATAACCTGTA 
    CTGCCACAAA GCCTGCAAAG TCACCAGCTG AAGAAGAATG GAAGATCAAG 
    AGGCAAGTGC TAGTAGAAAA GCGGGTCCGT AGTGTTGATG TGAAGGAAGC 
    ACTGCGTCTT CAGAAGGAAA ACAATTTTGC AATTCTTGAT GTCAGGCCAG 
    TAGCGGACTT TAAAGAGGCT CATCCACCTG GTGCCGTTAA TGTGCAAATA 
    TATAGATTGA TAAAGGAATG GACAGCATGG GATATTGCAA GACGGGCAGC 
    ATTTGCATTC TTTGGCATAT TTTCTGGAAC AGAAGAGAAT CCTGAGTTCA 
    TACAAAGTGT TGATGAGAAA CTTGGTAAAG ATGCAAAGAT TATTGTGGCA 
    TGTTCGACAG GAGGAACATT GAAACCAACA CAGAACTTTC CTGATGGGAA 
    GCAATCGAGG TCCCTGATAG CAGCTTACTT GTTGGTCCTG AATGGTTACA 
    AGAATGTGTT CCATCTGGAT GGAGGACTCT ACACATGGTT CAAGGAAGGC 
    CTACCGGCTG TTGAAGGAGA AGAATAAGCA ATTAGGACAT ATTACTTGTA 
    ATTAGTGCAT CAGTATTCAT GAACATGGAG GTGTGATGAG TTGTAACGAG 
    GCATCTTCTC GGATAAATAG TGCACTAGTT TGATCCTTTC TTCTTCCTTT 
    CCCAAAAGGA TATGCCTCCT TGGACCTCCT GCCTATATGA AGATGTGTTA 
    GATTTCTCAT GACCTGCTGC TGTCGACTTG TCGGTGTATG ATACTTGAGC 
    ATGCCCATTT GACAAAATAG ATAAGTATGT TAGAGC

    Gene models with high sequence identity

    1. AT4G27700.1 [+] show detail - Rhodanese/Cell cycle control phosphatase superfamily protein
      E-value: 5e-71; Score: 265.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Rhodanese-like 1.1e-23
    HMMPfam Rhodanese-like 2.8e-14
    superfamily Rhodanese-like 8e-24
    ProfileScan Rhodanese-like 18.436
    Gene3D Rhodanese-like 9.1e-19

    See the detailed result >

    AT4G27700.1

    Model type
    Protein coding
    Short Description
    Rhodanese/Cell cycle control phosphatase superfamily protein
    Computational Description
    Rhodanese/Cell cycle control phosphatase superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: aging; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763); BEST Arabidopsis thaliana protein match is: Rhodanese/Cell cycle control phosphatase superfamily protein (TAIR:AT3G08920.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR