K25951

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K25951

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K25951

Determination of introduced cDNA(s)

  • J033063G24 - Rice Full-length cDNAs - Original: J033063G24

    full reading [+] show sequence

    Nucleotide sequence: J033063G24 - full reading 
    GCTTCCCCCT TCAAACGCCG CCGCCGCCGC CGCTCTCTTC GGTCTCGCTT 
    CCCTTCTCCG GGAGATTCAG TCGCTGTTGT GGTGTTTGCT TCATCCACCG 
    CCACCATGCA GAACGAGGAG GGTCAGATGG TGGACCTCTA CGTCCCCAGG 
    AAGTGCTCGG CCACGAACAG GATCATCACC GCCAAGGACC ACGCCTCGGT 
    CCAGATCAAC ATTGGGCATG TGGATGAGAA TGGGCTGTAC GATGGCCGCT 
    TCACCACCTT TGCTCTCTCT GGGTTCATCC GTGCTCAGGG AGATGCTGAC 
    AGTGCTCTGG ATAGGCTGTG GCAGAAGAGG AAGGCTGAGG TCAAGCAGCA 
    GTAGATCTTG CTACTAGTTT TACCTGGAAG AACTCGTTTC AATTTCATGT 
    CTCTCTAGCT ACTTCATGCA ATGCCTGTGT TATCAGTTCG TACTCCGAAA 
    AAATTCGTGT GACTTGATCG GTTTATCCTG ATAATGTTTT ATCCATGTTG 
    AAGCTTTATT ACATCTGTTT CTCG

    Gene models with high sequence identity

    1. AT5G27700.1 [+] show detail - Ribosomal protein S21e
      E-value: 2e-34; Score: 141.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Ribosomal protein S21e, conserved site 0
    HMMPfam Ribosomal protein S21e 1.3e-39
    HMMPanther Ribosomal protein S21e 4.9e-47
    BlastProDom Ribosomal protein S21e 7e-23

    See the detailed result >

    AT5G27700.1

    Model type
    Protein coding
    Short Description
    Ribosomal protein S21e
    Computational Description
    Ribosomal protein S21e ; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic small ribosomal subunit, ribosome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S21e, conserved site (InterPro:IPR018279), Ribosomal protein S21e (InterPro:IPR001931); BEST Arabidopsis thaliana protein match is: Ribosomal protein S21e (TAIR:AT3G53890.2); Has 660 Blast hits to 660 proteins in 258 species: Archae - 0; Bacteria - 0; Metazoa - 293; Fungi - 137; Plants - 120; Viruses - 0; Other Eukaryotes - 110 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR