K26102

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K26102

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K26102

Determination of introduced cDNA(s)

  • J023027B10 - Rice Full-length cDNAs - Original: J023027B10

    full reading [+] show sequence

    Nucleotide sequence: J023027B10 - full reading 
    GAGAGCACGA GCTTACCTAG CTAGGTCCAG AGAAAAAACT GATACAACGA 
    TAGTAACAAT AACAGTAGAT AGTGTGTTAC TACTGCACGG TTCGTCGCAA 
    ACAATGGAGA ATAGCCAGAT GTGGCTTCTG TGGGGAGCCC TCTCCGTGGC 
    GCTCTTCTTC TACTTCTCCA CCCTGCGACG ACGCTACGCC GGCGGCAAGC 
    CCCTCCCCCC GGGCCCGACG CCGCTGCCGC TCATCGGCAA CCTACACTTG 
    GTCGGCGGCG GCACGTTCCA CCACAAGCTC AGGGACCTGG CACGCGTCCA 
    CGGCCCCGTC ATGACGCTCA AGCTCGGACT CGCCACCAAC GTGGTCATCT 
    CCTCCCGGGA GGCCGCCATC GAGGCGTACA CCAAGTACGA CCGCCACCTC 
    GCCGCGCGCG CCACCCCGGA CACCTTCCGC GCCTGCGGCT TCGCCGACCG 
    CTCCATGGTG TTCATCCCGA GCTCCGACCC GCAGTGGAAG GCCCTGCGGG 
    GGATCCACGC CTCGCACGTC TTCACCCCGC GGGTGCTCGC CGCGGTGCGC 
    CCCATCCGCG AGAGGAAGGT GGGCGACCTC ATCGCCTACC TCCGCGCGCA 
    CGCCGGGGAG GAGGTGCTCG TCGGCCACGC CATGTACACG GGCATCCTCA 
    ACATGGTGTC CTTCTCCTAC TTCTCCGTCG ACATCGTCGA CATGGGCTCG 
    CAGATGGCCC GCGAGCTGCG GGAGGTGGTG GACGACATCA TCTTGGTGGT 
    CGGGAAGCCC AACGTGTCCG ACTTCTACCC GTTCCTCCGG CCGCTGGACC 
    TGCAGGGCCT GCGCCGCTGG ACGACGAAGC GGTTCAACAG GGTGTTCTCC 
    ATCATGGGCG ACATCATCGA CCGCCGTTTG GCTCACATCC GCGACAACAA 
    GCCGAGGCAC GACGACTTCC TCGACTCAAT CCTCGAGCTC ATGGCTGCCG 
    GCAAGATCGA TCGTGTCAAC GTGCTCAACA TGTTGTTCGA GGCTTTCGTT 
    GCCGGGGCTG ACACCATGGC TCTTACCTTG GAGTGGGTAA TGGCCGAGCT 
    GCTCAAAAAC CCGAGCGTGA TGGCCAAGGC GCGCGCCGAG CTGAGGGATG 
    TGCTCGGCGA CAAGGAGATC GTGGAGGAGG CCGACGCGGC GAGGCTGCCC 
    TACCTGCAGG CCGTGCTGAA GGAGGCCATG AGACTGCACC CGGTGGGCGC 
    GCTGCTGCTG CCGCACTTCG CCATGGAGGA CGGCGTGGAG GTCGGCGGCT 
    ACGCGGTGCC CAAGGGCTCC ACGGTGCTCT TCAACGCGTG GGCGATCATG 
    CGCGACGCGG CGGCGTGGGA GAGGCCCGAC GAGTTCGTGC CGGAGCGGTT 
    CGTGGAGAGG ACGCCGCAGC TGGACTTCAG AGGGAAGGAC GTGGAGTTCA 
    TGCCGTTCGG GTCCGGGAGG CGGCTGTGCC CTGGGCTGCC GTTGGCCGAG 
    CGTGTCGTGC CGTTCATTCT GGCGTCGATG CTGCACACGT TCGAGTGGGA 
    GCTCCCCGGC GGCATGACGG CGGAGGAGTT GGACGTGTCC GAGAAGTTCA 
    AGACTGCCAA TGTCCTTGCT GTGCCTCTCA AGGCTGTGCC TGTCCTGATC 
    AAATAGTTGG ACGACTATAT TATTGGCCAG ATCAATTACC ATACTCGGCA 
    CCAGAATTAT ATTATTTTTA ACGAATTTGT ACTAGTGCAC ATTGAATAGA 
    GAAGAAGCAA AACTATACAA GTATAAGCCT ACACAGG

    Gene models with high sequence identity

    1. AT2G45570.1 [+] show detail - cytochrome P450, family 76, subfamily C, polypeptide 2
      E-value: 5e-93; Score: 338.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther CYTOCHROME P450 SUBFAMILY 76C 9.9e-199
    HMMPanther Cytochrome P450 9.9e-199
    superfamily Cytochrome P450 5.7e-117
    PatternScan Cytochrome P450, conserved site 0
    Gene3D Cytochrome P450 2.1e-113
    FPrintScan Cytochrome P450, E-class, group I 6.2e-25
    FPrintScan Cytochrome P450, E-class, group I 6.2e-25
    FPrintScan Cytochrome P450, E-class, group I 6.2e-25
    FPrintScan Cytochrome P450, E-class, group I 6.2e-25
    FPrintScan Cytochrome P450, E-class, group I 6.2e-25
    FPrintScan Cytochrome P450, C-terminal 1.3e-10
    FPrintScan Cytochrome P450, C-terminal 1.3e-10
    FPrintScan Cytochrome P450, C-terminal 1.3e-10
    HMMPfam Cytochrome P450 1.8e-88

    See the detailed result >

    AT2G45570.1

    Model type
    Protein coding
    Short Description
    cytochrome P450, family 76, subfamily C, polypeptide 2
    Curator Summary
    member of CYP76C
    Computational Description
    "cytochrome P450, family 76, subfamily C, polypeptide 2" (CYP76C2); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: oxidation reduction; EXPRESSED IN: stem, sepal, male gametophyte, carpel, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 76, subfamily C, polypeptide 4 (TAIR:AT2G45550.1); Has 34313 Blast hits to 34043 proteins in 1718 species: Archae - 48; Bacteria - 4021; Metazoa - 12101; Fungi - 7308; Plants - 9587; Viruses - 3; Other Eukaryotes - 1245 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR