K26103

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K26103

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K26103

Determination of introduced cDNA(s)

  • J023099B17 - Rice Full-length cDNAs - Original: J023099B17

    full reading [+] show sequence

    Nucleotide sequence: J023099B17 - full reading 
    GCCCCCACCA CCACCGCCAG CCACCAGCCA CTGCCGCGGC GGGAATCCGG 
    TTCCCGCGGC GACATCCCCC ACGTCTCCGC CGCTGCACCG GCAAAGGCAG 
    CTGCACCGCG ACCCACCCGC GCGCTCCCAA TCGGCCCCAA GATTAAGATT 
    AAACCAGGAG AGACCACCCG ATCGAGTGTT CTCTCACTTT CGCCATGGAG 
    CACCGACTGT GGTCAAGCGG GGCTAGCGAC AAGAACAAGG CAATGGTTGA 
    GCAGCTCCAG AGGTACGGGA TTATCAAGTC GAGCAAGGTC GCGCAGGTGA 
    TGGAGACCAT CGACAGGGGG CTGTTTGTGC CTCCTGGTGC TTCTCCCTAT 
    TTCGACAGCC CGATGCCCAT CGGTTACAAC GCCACCATTT CTGCGCCTCA 
    CATGCACGCC TCTTGCTTGG AGCTCCTGGA GAAGCACCTT CAGCCTGGCA 
    TGCGTGCTCT GGATGTTGGA TCAGGCACAG GGTACCTAAC AGCTTGCTTC 
    GCGATTATGG TTGGACCAGA AGGGCGAGCA GTTGGTGTTG AACATATCCC 
    AGAGTTGGTT ACTTCGTCTA TTGAAAACAT CAAGAAAAGT GCAGCGGCTC 
    CACAGTTAAC TGATGGATCC CTCAGTATAC ATATTACCGA TGGCAGAGAA 
    GGTTGGCCAG AGCTCGCACC CTATGATGCC ATCCATGTCG GAGCTGCTGC 
    ACCGCAGATT CCACAGGCGT TGATTGAGCA GCTAAAGCCC GGTGGCAGAA 
    TGGTGATCCC AGTTGGGACT ATGTTCCAGG AGCTGAAAGT GGTGGACAAG 
    AACCAGGATG GCAAGGTCAG CATAAGAGAT GAGACGGCTG TGCGCTATGT 
    GCCCCTCACA AGCAAGGATG CGCAGCTGCA GGCTAACTGA ATGCACTACC 
    ATAATATTCT GCTGAATGTA AAACCTTCAA TGCGTGATCC CAGTTACATC 
    AAGATGTTAT TATTGTACAT AAATTGGTCC TACCGTATGT GTGAATCGCT 
    TGGTGCTTGT CAACAATGTT GGATGTTGGT TCGTCATGAA GCATGGAAGT 
    ATGTGCTTGT GTCG

    Gene models with high sequence identity

    1. AT3G48330.2 [+] show detail - protein-l-isoaspartate methyltransferase 1
      E-value: 9e-95; Score: 343.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Protein-L-isoaspartate(D-aspartate) O-methyltransferase 7.4e-86
    superfamily S-adenosyl-L-methionine-dependent methyltrans 1.3e-54
    HMMPanther Protein-L-isoaspartate(D-aspartate) O-methyltransferase 1.4e-95
    HMMTigr Protein-L-isoaspartate(D-aspartate) O-methyltransferase 2.4e-82
    Gene3D no description 9.1e-61

    See the detailed result >

    AT3G48330.2

    Model type
    Protein coding
    Short Description
    protein-l-isoaspartate methyltransferase 1
    Curator Summary
    encodes protein-L-isoaspartate methyltransferase. Important for maintaining viability as the seed ages. Involved in germination.
    Computational Description
    protein-l-isoaspartate methyltransferase 1 (PIMT1); FUNCTIONS IN: protein-L-isoaspartate (D-aspartate) O-methyltransferase activity; INVOLVED IN: protein modification process, response to salt stress, aging, response to abscisic acid stimulus, seed germination; LOCATED IN: cellular_component unknown; EXPRESSED IN: seedling, seed; EXPRESSED DURING: dry seed stage; CONTAINS InterPro DOMAIN/s: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (InterPro:IPR000682); BEST Arabidopsis thaliana protein match is: protein-l-isoaspartate methyltransferase 2 (TAIR:AT5G50240.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR