K26110

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K26110

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K26110

Determination of introduced cDNA(s)

  • J013154A15 - Rice Full-length cDNAs - Original: J013154A15

    full reading [+] show sequence

    Nucleotide sequence: J013154A15 - full reading 
    GTGCTGAGTG AAAATAAGCT ATCAGGAGAA GTTCCAGCAA GCATAGGAAA 
    CCTTCAGGGC CTGTTTAGGT TAAGTCTAGA TTTGAACAAT CTTACTGGCA 
    AAATAGATGA GTGGGTTCCA AAGCTTACAA AACTGCAAAA ATTACTTCTC 
    CACAGGAACA ACTTTAGCGG GTCGATTCCA TCGTCTATAG CAGAGCTTCC 
    TCGTTTGTCA ACGCTTTCAC TAGCATATAA TGCATTTGAT GGTCCCATAC 
    CATCCTCATT GGGAAACCTT TCAGGACTCC AGAAGTTATA TCTAAGTCAT 
    AATAATCTCG AAGGTGTCAT ACCTCCAGAG CTTAGTTACC TTAAACAACT 
    AATAAATCTA AGTTTATCAG AAAACAAGCT TACTGGGGAG ATCCCTGGCA 
    CTTTGAGCCA GTGTAAAGAC CTGGCAAACA TCCAAATGGG CAATAACTTC 
    CTTACTGGCA ATATCCCAGT AACTTTTGGC GACCTAAAGA GCCTGGGCGT 
    ACTCAATCTT TCCCATAACA GCTTGTCGGG CACAATTCCG ACTACACTAA 
    ATGATCTACC AGTCATGAGC AAACTGGACC TTTCATACAA TCGTCTCCAA 
    GGAAAAATAC CAATGACTGG AATATTTGCA AATCCTACTG TTGTTTCGGT 
    CCAGGGAAAC ATAGGACTAT GTGGAGGAGT GATGGATCTC CGTATGCCCC 
    CATGCCAAGT TGTTTCCCAG AGAAGAAAAA CACAGTACTA TTTGATTAGA 
    GTATTGATCC CTATATTTGG CTTCATGTCA CTCATATTAG TGGTCTACTT 
    CTTACTTCTT GAGAAGATGA AGCCAAGAGA AAAATATATA TCCTCGCAAT 
    CTTTTGGTGA GAATTTCCTT AAAGTCTCAT ATAATGATCT AGCTCAAGCC 
    ACAAGAAACT TCTCGGAGGC TAACCTTATT GGCAAAGGAA GCTATGGTAC 
    GGTGTACAGA GGTAAGTTGA AGGAATGTAA GTTGGAAGTA GCCGTGAAGG 
    TTTTTGACCT TGAGATGCGA GGTGCCGAAA GAAGCTTCAT ATCGGAATGT 
    GAAGCTCTCA GAAGCATTCA ACATAGAAAT CTTCTTCCAA TCATAACTGC 
    ATGCTCGACC GTGGACAGTA CGGGCAACGT TTTCAAAGCT TTAGTTTACG 
    AGTACATGCC TAATGGCAAC TTGGACACTT GGATACATGA CAAAGAGGGT 
    GGGAAAGCTC CCGGACGTTT GGGTTTAAGA CAAACAATTA GCATATGTGT 
    TAACATAGCC GATGCACTGG ACTATTTACA CCATGAATGC GGAAGAACAA 
    CTATCCATTG TGATTTGAAA CCCAGCAATA TACTTTTAGC TGATGACATG 
    AATGCTCTTT TGGGAGATTT TGGCATTGCA AGATTTTATA TCGACTCTTG 
    GTCGACATCA ACAGGTTCGA ATAGTACAGT CGGTGTTAAG GGTACCATAG 
    GGTATATTCC TCCAGAGTAC GCGGGAGGTG GTCATCCATC TACTTCTGGG 
    GATGTTTATA GTTTCGGGAT AGTGATCCTG GAGCTTATAA CAGGAAAAAG 
    ACCGACTGAT CCTATGTTCA AAGACGGACT CGACATTATC AGCTTTGTCG 
    AGAGTAACTT TCCACACCAG ATATTTCAAG TGATTGATGC TCGACTCGCA 
    GAAAAGTCCA TGGACTCCAA TCAAACAAAT ATGACACTGG AAAATGCTGT 
    CCACCAGTGC TTGATATCTC TGCTACAACT TGCGCTTTCT TGTACGCGCA 
    AATTACCAAG TGATCGCATG AACATGAAAC AAATAGCCAA CAAGATGCAT 
    TCAATCAAGA CGACATATGT TGGATTGGAA GCTAAGAAAT ATGGTCCGGC 
    ATGTAATGAA CAAGATGCAT GAAACCCCAC GCGTTATTAC AGGCGACCCT 
    GAGTCGCGCA CAACAATTGC AACATATTGA TAAGTGTATA GTCCAACAAG 
    AAGAAAATGG TTCTTGTGTG TTAGAAGTTA AGATAATTAA GGTGATAATA 
    TGAAGCACCA AAGCGTACCT TCTAACGGTG ATAATATGAA GATTGGTGAT 
    TGTGACTTTA TGTCATGGTT TATTTATAAC AATATATTAC TTCAATAATG 
    TAATAGTATA TGTATACGTA GATAATGATG TTGTACCTAG CATGATCTTG 
    TATTATATGC AAGTTGAACT AATAAAAAAC CATTTCTGCA GGCACCCCTG 
    CTTTATTTTC

    Gene models with high sequence identity

    1. AT3G47570.1 [+] show detail - Leucine-rich repeat protein kinase family protein
      E-value: 6e-119; Score: 425.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Protein kinase, ATP binding site 0
    ProfileScan Protein kinase, catalytic domain 34.478
    HMMSmart Leucine-rich repeat, typical subtype 61
    HMMSmart Leucine-rich repeat, typical subtype 10
    HMMSmart Leucine-rich repeat, typical subtype 88
    HMMSmart Leucine-rich repeat, typical subtype 95
    HMMSmart Serine/threonine-protein kinase domain 5.5e-38
    HMMSmart Tyrosine-protein kinase, catalytic domain 0.000000000000035
    HMMPfam Serine/threonine-protein kinase-like domain 7.4e-41
    HMMPfam Leucine-rich repeat 0.016
    HMMPfam Leucine-rich repeat 1
    Gene3D no description 5.6e-59
    Gene3D no description 0.0000000000000012
    Gene3D no description 5.7e-42
    HMMPanther LEUCINE-RICH REPEAT TRANSMEMBRANE PROTEIN KIN 4.9e-167
    HMMPanther SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE 4.9e-167
    superfamily Protein kinase-like domain 4.2e-72
    superfamily L domain-like 1.3e-56

    See the detailed result >

    AT3G47570.1

    Model type
    Protein coding
    Short Description
    Leucine-rich repeat protein kinase family protein
    Computational Description
    Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT3G47580.1); Has 213556 Blast hits to 133070 proteins in 4776 species: Archae - 194; Bacteria - 22980; Metazoa - 68117; Fungi - 10236; Plants - 86850; Viruses - 328; Other Eukaryotes - 24851 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR