K26112

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K26112

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K26112

Determination of introduced cDNA(s)

  • J023040F17 - Rice Full-length cDNAs - Original: J023040F17

    full reading [+] show sequence

    Nucleotide sequence: J023040F17 - full reading 
    TCCCTCCTGG CGTCGGGGGC GAGGACGAGG ACGCCGCTAG GGAGGGGTTC 
    GCCGATCGGA TCAGGAGGAT GATATCGGAG CGCCCGCCCG ACGATTTCCC 
    GATGCCGCCT CCTCCTCCTC CGCCGTTGCC GCCGATGCAG CACGTCCCGC 
    CGCGACAGCG GAGAACGCCC CGGAGGAGAC TGAGGGAGGA CGGAGGAGGA 
    GGCGGTGGCG GAAGCAGCGG GGATTCCTCG GGAGGGGAGG GTACGAGCGC 
    TGCACCGAAG AGGGAGTGGT GGGGAGGGGC CACCCTGGGA GAAGAGCTTC 
    CCACGCCGCG GGAGATGTGC CGGAGGCTCG ACGAGTTCGT CATCGGGCAG 
    GGGAAAGCTA AAAAGGTCTT GTCGGTAGCT GTATACAATC ACTACAAGAG 
    AATATATAAC GCGACTGTAC AGAAAGGGTG TTCCACCAAT TCTGGGTGGC 
    TAGACGCTGC AAGTGATGAT CAAAATAACA TAGAAATAGA TAAAAGCAAT 
    GTGCTTCTAA TGGGTCCAAC TGGCTCAGGA AAAACATTAC TCGCCAAAAC 
    ACTAGCACGC ATTGTAAATG TACCATTCAT TATAGCTGAC GCAACATCAT 
    TAACACAGGC TGGATATGTA GGTGAAGATG TAGAGTCGAT ACTGCAGAAG 
    TTACTAGTGG CTGCTGAATA TAATGTTCAA GCTGCCCAAC AAGGGATAGT 
    GTACATAGAC GAAGTAGATA AGATAACAAA GAAGGCAGAG AGTGCAAATG 
    TTAGCAGAGA TGTATCTGGG GAAGGTGTTC AACAAGCACT GTTAAAAATC 
    CTAGAAGGAA CTGTTGTTAG CATTCCTGAG AAGGGATCTC GCAAGAATTC 
    CCGCAATGAG AGCATACAGA TAGACACAAA AGATATTCTT TTCATATGTG 
    GTGGCGCTTT TGTCGACTTG GAGAAGACTA TTTCTGAAAG GCGCCAAGAT 
    TCATCTATAG GTTTTGGGGC ACCCATTCGG ATAAACATGA GAAGTTCTGA 
    AGTGACTGAT CCAATGGTCA CTTCATCATT GTTGGAATCT GTTGAGAGTG 
    GCGATCTTGC AAGATATGGT TTGATACCAG AGTTTATTGG ACGCTTGCCC 
    ATCCTAGTTA GTTTGACAGC TCTCAATGAA GATCAGCTTG TTCAGGTTCT 
    TACAGAACCA AAGAATTCTC TTTCCAGACA ATACAGGAAA ATGTTTAGCC 
    TGAACAAAGT TAAGTTACAC TTTACTGATG GTGCACTTAG AATAGTAGCC 
    AAGAAGGCTA TAGCCAGAAA TACTGGTGCA CGTGGTCTGA GAGCCATCTT 
    GGAAAGCCTT CTATTGGAGG CCATGTATGA GATCCCAGAC GAGAAAACAG 
    GAAGCGAACG AGTAGACGCT GTTGTGGTGG ATGAGGAGGC AATAGGTTCA 
    ATTGATAGGC CAGGATGTGG AGCCAAAATT CTTCGGGGTG ACGGTGCATT 
    GGAGCAGTAC ATAACAAACA CTAACATGAA GAATTCCATG GAAGCTAACG 
    AGGGTTTGGC GGGTGAACTT GAAGATGCAT ATATGATGTC AAGATTTGTT 
    AGCTTGTAAT TAATTTGACC AACTTCATTC AACATGTAAC ATGGTCTCCC 
    CCTCACTCAC ATCACAGCCG CTTGTTCTCT TACCATTTTT TTCTGTAATT 
    TATTTTTGCT TGTTTTCTGA CAAGCAAGTC TATAGCTCAA TTTGTTGTAA 
    TTCATGTAAA CAGGAGTTGC TTTTCATTGA GCAACCCTCC TGCAAAGTAA 
    ATTTGCCCCT TCTTTTTTTC TGAAGCCACC AACTGGGCAG TTTAGTTATT 
    GGCAAAAGTA TAAAGAATCC TACATACCAT TGTTTCCTAG TACATGATAT 
    GGTGCCATTT TCCTGACATG ATAAGCCATC AACTGGGACA GCAAGTTTCA 
    AGTATTATAT GTGAAATAAT GTAATGATGA ATGATTTGAA TGTCCT

    Gene models with high sequence identity

    1. AT5G53350.1 [+] show detail - CLP protease regulatory subunit X
      E-value: 2e-161; Score: 566.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMTigr Clp protease, ATP-binding subunit ClpX 3e-165
    HMMPfam ATPase, AAA-2 4.9e-46
    HMMPfam Clp ATPase, C-terminal 3.2e-15
    Gene3D no description 1.3e-88
    Gene3D no description 3.3e-27
    HMMSmart ATPase, AAA+ type, core 6.1e-10
    HMMPanther Clp protease, ATP-binding subunit ClpX 1.1e-231
    HMMPanther HSL AND CLP PROTEASE 1.1e-231
    superfamily P-loop containing nucleoside triphosphate hyd 3.7e-64

    See the detailed result >

    AT5G53350.1

    Model type
    Protein coding
    Short Description
    CLP protease regulatory subunit X
    Curator Summary
    CLP protease regulatory subunit CLPX mRNA, nuclear gene
    Computational Description
    CLP protease regulatory subunit X (CLPX); FUNCTIONS IN: unfolded protein binding, nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: protein folding; LOCATED IN: mitochondrion, mitochondrial matrix; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Clp ATPase, C-terminal (InterPro:IPR019489), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-2 (InterPro:IPR013093), Clp protease, ATP-binding subunit ClpX (InterPro:IPR004487); BEST Arabidopsis thaliana protein match is: ATP-dependent Clp protease (TAIR:AT1G33360.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR