K26122

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K26122

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K26122

Determination of introduced cDNA(s)

  • J033094G14 - Rice Full-length cDNAs - Original: J033094G14

    full reading [+] show sequence

    Nucleotide sequence: J033094G14 - full reading 
    GACCACCAGC CGCCGCCTCG GCCGCGAGAT CGCCGGCCGC CGCCATGTCG 
    AATCCGGCCG CCTACTACGC CGCCGTCGCG CGGAAGCAGT ACTTCTGCTA 
    CCAATGCAAC CGCACCGTCC TCCTCCCGGC CTCCGCCGCC GCCGCCGGGG 
    CGCTCTCCTG CCCGGAGTGC CGCGGGGATT TCATCGAGGA GGTCAACGTC 
    CCCGCCCCCG CCATCATCCC CTTCCCCTTC GCCTTCCCCC CGATGATGCC 
    CACCGCCACC TCCGCCTCCG CCGCCGCCGC CGCCGCGGCC TCGCCGACCC 
    AGTCCTCCTC CTCGTCCGCC GCCACGTCGC CATCCAGCGA CCTCTCCGCC 
    TTCCTCAACA GCATGCTCGG CCCGCTCAAC CTCCGCACCG ACGAGCGGAT 
    GCCGGGAACC ACCTCCGCCG CGGGCACGGC GACCCCCGAG GACGAGCCCG 
    ACGGGTTCGA CGCGGTCACG TTCTTCCAGA ACTACCTCCA GAATCTCATG 
    GACGGCGGCG CCAACATCCA GGTCCTCCTC GACGACGCCA GCGTCGGCCT 
    CGCCCCCGGC ATCGGCCGCG TCGGCGGCGC CAGCTTCGGG GACTACTTCG 
    TCGGCCCGGG CCTGGAGCAG CTCATCGAGC AGCTCACCGA GAACGACCCG 
    AACCGCTACG GCACGCCGCC GGCGGCCAAG TCGGCTCTCT CCACGCTCCC 
    CGATGTCGTC GTGACCGACG CCATGGTCGC CGCGGCGGAT GGCGCCGAGT 
    GCGCCGTCTG CAAGGAGGAT TTCTCGCCTG GGGAAGGGGC CAAGCAGATG 
    CCCTGCAAGC ACATTTACCA CGCCGACTGC ATCATGCCAT GGCTGGATCT 
    CCACAATTCA TGCCCCATAT GCCGCTTTGA GCTGCCTACT GATGACCCTG 
    ATTACGAGGG GCGTAAGAAA TCAAACCCAC AGCCAACTGC TGGCGTTGAT 
    GCCGGAGCTG CATCTGGGAG TTCTACTGCT GCTGAGGAGC GAGAGGAGAG 
    TGGGGAGAGT GCGAGGTTGG TCGAACGGCG GTTTAACGTG TCGCTGCCAT 
    GGCCTTTTAG TGGATTGGGA TCGCAAACGC CGCAGCAGGA TGGGAGCAAT 
    GGGGGCGCTG GTGCCAGTGG CTCGAAGGAT GGAGGCGCAT CCAGTGACAA 
    AAAATAAGCA TAAATGTGCG ATTGATTGGA GGTTTTCCTC TTGGATCTGG 
    CGTTCAAAGG TCTACAATAT TTATGTGTCG CTGCCACTTA TATACTATAG 
    ACATCAAAAG ACCAAAGAAA TTTACAGTCT TTTTATCCGC TGGAACAATT 
    GTTCATTCTT GTTCTCGCTG CCCGTTAGGT CATGTACACA AGGCACGGAA 
    ACTGCCGAGG CAGGAAACGT GCGTTGGGAG TTTGAGACTT TTATGTGTAG 
    ATTTGTTAAT TAAATTCATC AAAGTACCAA ACTTGGAGC

    Gene models with high sequence identity

    1. AT3G19950.1 [+] show detail - RING/U-box superfamily protein
      E-value: 6e-46; Score: 182.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Zinc finger, C3HC4 RING-type 8.3e-06
    HMMSmart Zinc finger, RING-type 6e-07
    Gene3D no description 4.1e-14
    ProfileScan Zinc finger, RING-type 12.15
    HMMPanther RING ZINC FINGER PROTEIN 2.8e-42
    superfamily RING/U-box 4.7e-16

    See the detailed result >

    AT3G19950.1

    Model type
    Protein coding
    Short Description
    RING/U-box superfamily protein
    Computational Description
    RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G55530.1); Has 11106 Blast hits to 11075 proteins in 297 species: Archae - 0; Bacteria - 6; Metazoa - 2940; Fungi - 1152; Plants - 5266; Viruses - 73; Other Eukaryotes - 1669 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR