K26128

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K26128

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K26128

Determination of introduced cDNA(s)

  • J023050B21 - Rice Full-length cDNAs - Original: J023050B21

    full reading [+] show sequence

    Nucleotide sequence: J023050B21 - full reading 
    GGATAACCAC CTTGCCTTGC TTGCCTCTCA TCAGACGATT GATCGACAAG 
    AGAGAGAAAG AGCTTGCGTC GCAATGACCG CCGTCGACTT GATGCCTGCA 
    GCTGACGACG ACAACAACAA GCAGTCATCC ACCGGCCTCC TCCACCACCA 
    CCAGCTCCCC GCCGCCGCCG ACAACGCCAT ACTACACAAT ACCAGGCGGC 
    TGGAGGGGAA GGTGGCCATC GTCACCGGCG GCTCGCGTGG CATCGGCGAA 
    GCCATCGTAA GGGCCTTCGT TCACCACGGC GCTCTCGTCG TCGTCGCCGA 
    CATCGACGAC GCCGGGGGCC ACGCGCTGGC CGCCGCGCTC GGCCCGCACG 
    CCTGCACCTA CGTCCACTGC GACGTGGCCG AGGAGGCCGA CGTGGAACGC 
    GCCGTCGCCA CCACGCTGGA GCAGCACGGC CGCCTGGACG TGCTGTGCAA 
    CAACGCCGGG GTGCTGGGCC GCCAGACGCG CGGCGCCAAG AGCATCGCGT 
    CCCTCGACGC CGCCGAGTTC GCCCGCGTGC TGCGCGTCAA CGCGCTGGGC 
    GCCGCCCTCG GAATGAAGCA CGCGGCGCGT GCCATGGTGC CCCGCCGCTC 
    CGGGAGCATC GTGTCGGTGG CGAGCGTGGC GGGCGTGCTG GGCGGCCTCG 
    GCCCGCACGC GTACACGGCC TCCAAGCACG CCCTAGTGGG GCTCACCAAG 
    AACGCCGCCT GCGAGCTCGG GGAGCACGGC ATCCGCGTCA ACTGCATCTC 
    CCCCTTCGGC GTGGCGACGC CGATGCTGGT GAACGCGTGG CGGCAGGGGC 
    AGGGAGGAGA TCACGCGGAT GAGGATCAGG CGGCGGCGAG CGAGGAGGAG 
    GAGGTGGAGA AGATGGAGGA GATGGTGCGG AGGCTGGCGA CGCTCAAGGG 
    GCCGACGCTG CGGGCAGGCG ACATCGCGGA GGCGGCGGTG TTCCTGGCCA 
    GCGACGAGTC CAGGTACGTG TCCGGCCACA ACCTCGTCGT CGACGGCGGC 
    GTCACCACCT CCAGAAACGT CATCGGCCTC TGAATTGAAT CTCTCTCTCT 
    CTCTCTTAGC TAATTACTAT TTCAGTTATA TATATATATA TATATATATA 
    AGTCCGTGAC CGTCCTCATC GATCATATGA TGATCGATGG ATGTACTCCC 
    GCATGCTCGA CTGTGCTGTC TGAAATCTGA TGACTGAATT CCAGCACTTG 
    CGCATTGTTG ATTATTATGC C

    Gene models with high sequence identity

    1. AT3G51680.1 [+] show detail - NAD(P)-binding Rossmann-fold superfamily protein
      E-value: 4e-68; Score: 255.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan Glucose/ribitol dehydrogenase 2e-39
    FPrintScan Glucose/ribitol dehydrogenase 2e-39
    FPrintScan Glucose/ribitol dehydrogenase 2e-39
    FPrintScan Glucose/ribitol dehydrogenase 2e-39
    FPrintScan Glucose/ribitol dehydrogenase 2e-39
    FPrintScan Glucose/ribitol dehydrogenase 2e-39
    FPrintScan Short-chain dehydrogenase/reductase SDR 2.9e-11
    FPrintScan Short-chain dehydrogenase/reductase SDR 2.9e-11
    FPrintScan Short-chain dehydrogenase/reductase SDR 2.9e-11
    HMMPanther SHORT CHAIN ALCOHOL DEHYDROGENASE 4.7e-139
    HMMPanther Short-chain dehydrogenase/reductase SDR 4.7e-139
    Gene3D NAD(P)-binding domain 1.2e-67
    superfamily NAD(P)-binding domain 1.4e-70
    Coil coiled-coil 0
    HMMPfam Short-chain dehydrogenase/reductase SDR 1.8e-29

    See the detailed result >

    AT3G51680.1

    Model type
    Protein coding
    Short Description
    NAD(P)-binding Rossmann-fold superfamily protein
    Computational Description
    NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: oxidation reduction, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: cotyledon, root; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT3G26770.1); Has 119773 Blast hits to 119555 proteins in 3701 species: Archae - 1000; Bacteria - 77051; Metazoa - 6334; Fungi - 6742; Plants - 2947; Viruses - 5; Other Eukaryotes - 25694 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR