K26138

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K26138

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K26138

Determination of introduced cDNA(s)

  • J013155I19 - Rice Full-length cDNAs - Original: J013155I19

    full reading [+] show sequence

    Nucleotide sequence: J013155I19 - full reading
    GGCGTGGCGT CCTCTTCCCT CCAGTCCCCG CCCCCGGTTT TGCCTTCCTC 
    CCCTCCTGCC TGGGTTTGGT TTGGTTTGGC TTTGCTTCTT CCTCGCGCGG
    CGCCTCCCAT CCGCATGGAT GATGCCTTCT CCTTCTCCTT CTCCTTCTCC
    TTCTCCTTCT TGATATTTCC ATTTCCTCCC CATTGTTCCC TCCTTCTGCC
    TCCTCCCTCC TCAAATCTAC ACCTATCCCC ACCACCGCCC TAGCTTCTTC
    TCCTCTCCCG CAGCCGCCCG CAAGATCGAT CTGTCACTCA TGCCCGTGCA
    GCTGGGAGGA GGGGGCAAGG TGGCGGAACC CAAGGACCTC GCCGCCACCG
    ACAAGGACCG CCCCTCCTCC AAGAAGAACC GCCGCCGCCA AAAGAAGCCC
    GCAACTTCCG CCGCCATCTC CCCGCCGGTC GCCGCCATGC AGACCCTCTT
    CGACACCAGC AGGGAGGTCT TCCAGGATTC TTTGCCGGGA TTCGTGCCGC
    CGCCCCAAGC CGTCGCCCGA CTCGCCGCCC TACTCAATGA TTTGAAACCA
    CATGATGTTG GAATTGAGCC GAGTATGTCG TGTTTCAAGA ATGCCGATTC
    TAAAGGGCCT CCTCGGGTGA CTTATCTACA TTTTTACGAT TGCCCCAAGT
    TTTCGTTTGG TATCTTCTGT TTACCGAAGT CAGCTGTCAT TCCCCTCCAC
    AATCATCCTG GGATGACAGT ATTCTGCAAG ATACTGTTTG GCTCCATGCA
    CCTCAAGTCC TATGACTGGG CTAAAAGTGC CCCAGATAAT GATAATAATG
    CACTTGAGAC CTCAGATGGA GCTCGTTTAG CAAAGGTAAA TACAGATGCG
    GTTTTTGATG CTTCATCGGA GACCACAGTT CTATACCCTG AAAATGGAGG
    GAATTTGCAC TGTTTTACTG CAAGGACAGC TTGTGCTGTG CTTGACGTGA
    TGGGACCCCC GTACAACCGC GCGGATGGAA GGGATTGCTC ATATTACGAC
    GAATCCCCAT ACTTGAGTTC ATCTGGTGGA GATGCGCGGT ACTCGTGGCT
    CAAAGAAAAT CATAGTACGT TCGAGATGAA AGGTGTACAG ATGCCACAAA
    GGTTTATCGT TTAGAAATGA CATACAGCAT CATTTTGTGG CAACACCTGC
    AACCATTTCC GCCGAAGAAT GGTCCTCCTC TAGCTTGCTG TAGATACCTG
    TAACTGCAAA GACAGGCAGA TGGTACAAGG GAAGATGTGG CCACTAAGCT
    CAGACTAGCA AACTCTTGAG TGACACAGAC GTTACATTTG TTTGGCTTCT
    TATTTTGGTC AGGGTTGAAA CAATCTCTTG TGATTTTCAG ATAACTCTGT
    TCCTCATATG TTATCCTCGT CTGGCAGTGC AAAATTGGGA TTGGGTGATA
    CAGTGAACAA GTGTTTTGTT TTTGGGCCAT GATCATCTTT TTTTGTTTCC
    CTGTAGAACT GTATGCAGGC GTTTTTTGAA AGTGATCATG TACCGAATTC
    AGAGTGTGGT TTGCTTGGTT TGTTGAACAG GGAGGCTATT CCTTTTTGCC
    TCTTACTGTA GTAGACAAGA GGCATATACA TACATAACAT AGCCTTTGTT
    TCTTGAGCAA AGAAATTTGT GTCACC

    Gene models with high sequence identity

    1. AT5G39890.1 [+] show detail - Protein of unknown function (DUF1637)
      E-value: 4e-60; Score: 229.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther Protein of unknown function DUF1637 1.7e-56
    HMMPfam Protein of unknown function DUF1637 1.2e-64

    See the detailed result >

    AT5G39890.1

    Model type
    Protein coding
    Short Description
    Protein of unknown function (DUF1637)
    Computational Description
    Protein of unknown function (DUF1637); FUNCTIONS IN: cysteamine dioxygenase activity; INVOLVED IN: oxidation reduction; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1637 (InterPro:IPR012864); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1637) (TAIR:AT5G15120.1); Has 361 Blast hits to 361 proteins in 93 species: Archae - 0; Bacteria - 0; Metazoa - 102; Fungi - 0; Plants - 224; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR