K26138

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K26138

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K26138

Determination of introduced cDNA(s)

J013155I19 - Rice Full-length cDNAs - Original: J013155I19

full reading [+] show sequence

GGCGTGGCGT CCTCTTCCCT CCAGTCCCCG CCCCCGGTTT TGCCTTCCTC 
CCCTCCTGCC TGGGTTTGGT TTGGTTTGGC TTTGCTTCTT CCTCGCGCGG 
CGCCTCCCAT CCGCATGGAT GATGCCTTCT CCTTCTCCTT CTCCTTCTCC 
TTCTCCTTCT TGATATTTCC ATTTCCTCCC CATTGTTCCC TCCTTCTGCC 
TCCTCCCTCC TCAAATCTAC ACCTATCCCC ACCACCGCCC TAGCTTCTTC 
TCCTCTCCCG CAGCCGCCCG CAAGATCGAT CTGTCACTCA TGCCCGTGCA 
GCTGGGAGGA GGGGGCAAGG TGGCGGAACC CAAGGACCTC GCCGCCACCG 
ACAAGGACCG CCCCTCCTCC AAGAAGAACC GCCGCCGCCA AAAGAAGCCC 
GCAACTTCCG CCGCCATCTC CCCGCCGGTC GCCGCCATGC AGACCCTCTT 
CGACACCAGC AGGGAGGTCT TCCAGGATTC TTTGCCGGGA TTCGTGCCGC 
CGCCCCAAGC CGTCGCCCGA CTCGCCGCCC TACTCAATGA TTTGAAACCA 
CATGATGTTG GAATTGAGCC GAGTATGTCG TGTTTCAAGA ATGCCGATTC 
TAAAGGGCCT CCTCGGGTGA CTTATCTACA TTTTTACGAT TGCCCCAAGT 
TTTCGTTTGG TATCTTCTGT TTACCGAAGT CAGCTGTCAT TCCCCTCCAC 
AATCATCCTG GGATGACAGT ATTCTGCAAG ATACTGTTTG GCTCCATGCA 
CCTCAAGTCC TATGACTGGG CTAAAAGTGC CCCAGATAAT GATAATAATG 
CACTTGAGAC CTCAGATGGA GCTCGTTTAG CAAAGGTAAA TACAGATGCG 
GTTTTTGATG CTTCATCGGA GACCACAGTT CTATACCCTG AAAATGGAGG 
GAATTTGCAC TGTTTTACTG CAAGGACAGC TTGTGCTGTG CTTGACGTGA 
TGGGACCCCC GTACAACCGC GCGGATGGAA GGGATTGCTC ATATTACGAC 
GAATCCCCAT ACTTGAGTTC ATCTGGTGGA GATGCGCGGT ACTCGTGGCT 
CAAAGAAAAT CATAGTACGT TCGAGATGAA AGGTGTACAG ATGCCACAAA 
GGTTTATCGT TTAGAAATGA CATACAGCAT CATTTTGTGG CAACACCTGC 
AACCATTTCC GCCGAAGAAT GGTCCTCCTC TAGCTTGCTG TAGATACCTG 
TAACTGCAAA GACAGGCAGA TGGTACAAGG GAAGATGTGG CCACTAAGCT 
CAGACTAGCA AACTCTTGAG TGACACAGAC GTTACATTTG TTTGGCTTCT 
TATTTTGGTC AGGGTTGAAA CAATCTCTTG TGATTTTCAG ATAACTCTGT 
TCCTCATATG TTATCCTCGT CTGGCAGTGC AAAATTGGGA TTGGGTGATA 
CAGTGAACAA GTGTTTTGTT TTTGGGCCAT GATCATCTTT TTTTGTTTCC 
CTGTAGAACT GTATGCAGGC GTTTTTTGAA AGTGATCATG TACCGAATTC 
AGAGTGTGGT TTGCTTGGTT TGTTGAACAG GGAGGCTATT CCTTTTTGCC 
TCTTACTGTA GTAGACAAGA GGCATATACA TACATAACAT AGCCTTTGTT 
TCTTGAGCAA AGAAATTTGT GTCACC

Gene models with high sequence identity

AT5G39890.1 [+] show detail - Protein of unknown function (DUF1637)
E-value: 4e-60; Score: 229.00

InterPro Scan Digest

Program	Description	E-value
HMMPanther	Protein of unknown function DUF1637	1.7e-56
HMMPfam	Protein of unknown function DUF1637	1.2e-64

See the detailed result >

AT5G39890.1

Model type: Protein coding
Short Description: Protein of unknown function (DUF1637)
Computational Description: Protein of unknown function (DUF1637); FUNCTIONS IN: cysteamine dioxygenase activity; INVOLVED IN: oxidation reduction; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1637 (InterPro:IPR012864); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1637) (TAIR:AT5G15120.1); Has 361 Blast hits to 361 proteins in 93 species: Archae - 0; Bacteria - 0; Metazoa - 102; Fungi - 0; Plants - 224; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink).
Link: InterPro Scan - TAIR