K26145

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K26145

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • increased width (PATO:0000600)
    (Seed::Shape::wide)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K26145

Determination of introduced cDNA(s)

  • J013128A13 - Rice Full-length cDNAs - Original: J013128A13

    full reading [+] show sequence

    Nucleotide sequence: J013128A13 - full reading
    CCTCGACCTC GCCGCAAATC CTCCGCCGCT CCTCCGCCGC TAGGGCATAA 
    CCGCCCGCCT CTCGCCGGCA TCCGCATCTC CCGGGGAAGG GAAGGGAAGG
    GAAGGGAAGG AAGGAAGGTG AGGGCGGATA TGTCGGCGGC GCCGATACCC
    CGCGAGTGGG TGGGGCTGCA GCAGTTTCCG GCGGCTACCC AGACCAAGCT
    GCACGAGCTC CTCGGCAAGC TCAAGGAGGA GAATGTGAGC ACATTGACAA
    TTCTGGTGAT GGGGAAGGGC GGGGTGGGGA AGTCATCCAC CGTCAACTCC
    ATCGTTGGCG AGAGGGTCGC TACTGTCAGC GCCTTCCAGT CCGAGGGTCT
    CAGGCCGATG ATGTGTTCTC GCACCAGGGC AGGCTTCACC TTGAACATTA
    TTGACACTCC TGGGCTCATT GAAGGTGGAT ACATCAATGA GCAGGCTGTT
    GAGATCATAA AAAGGTTTCT TCTGGGCAAG ACTATTGATG TCCTCCTTTA
    TGTGGATCGA TTGGATGCAT ACAGAATGGA CACGTTGGAT GATCAAGTTA
    TTAGAGCTGT CACCAATTCA TTTGGAAAGG CCATTTGGCG AAGAACATTG
    GTTGTATTAA CACATGCTCA GCTCTCACCA CCTGATGGAC TTGACTATAA
    CGATTTCTTT ACAAAAAGAT CTGAGTCACT TTTGCGATAC ATTCGTGCTG
    GTGCAGGAGT CAGCAAACGA GAACTTGGGG ATTTTCCCTT GCCAATTGCA
    TTGGTGGAGA ACAGTGGAAG GTGCAAAACT AATGAGAATG GAGAGAAGGT
    TCTCCCTGAT GGAACTCCAT GGATTCCGAA CTTGATGAAA GAGATTACTA
    CTGTTGTCTC AAACGGGAGC AAATCCATTC ATGTTGATCA AAAGCTAATA
    GATGGTCCAA ATCCCAACAA TCGCTGGAAG ATGTTCATAC CGCTCATCCT
    TATGGTGGAG TACTTTTTGG TTGTAAAAGG CATCCGAAGG GCCATTCATG
    CTGACATATC AAACGGGAAG CTAGATGACT GGGAACAGCG TTACAGAGAC
    TTGGTTGGAA GCAAGGACCC GGTAGACCAG AAAGGTTCAT CATCCGGCAA
    CCGCAAGGCT TGAGCTGAAG AATGATACCG CATGCATCGT GACCCATTCA
    ATTCTCTGTG CTTTTCTTTT TGCGCTCTAT TCCAGTGATC TATTTGGGAA
    GCTTTATAGA GTTATCTGGG ACAATTTGAG CAAATTTGCT CTTGTTTTTA
    GTTGCTAAAA AAACTGTACT GAATTTTTTT GTGCTGTCGC AATTTTGCAA
    ATGTTGTTGA TCGAAACTTC G

    Gene models with high sequence identity

    1. AT5G05000.3 [+] show detail - translocon at the outer envelope membrane of chloroplasts 34
      E-value: 4e-106; Score: 382.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMTigr Chloroplast protein import component Toc34 1.1e-228
    HMMPIR Chloroplast protein import component Toc34 5.3e-257
    Gene3D no description 1.5e-94
    HMMPfam AIG1 3.3e-34
    HMMPanther AIG1 0.00000000001
    superfamily P-loop containing nucleoside triphosphate hyd 7.7e-38

    See the detailed result >

    AT5G05000.3

    Model type
    Protein coding
    Short Description
    translocon at the outer envelope membrane of chloroplasts 34
    Curator Summary
    Outer membrane GTPase protein that may function in import of nuclear encoded proteins into the chloroplast. Phosphorylation of the G-domains regulate translocon assembly.
    Computational Description
    translocon at the outer envelope membrane of chloroplasts 34 (TOC34); FUNCTIONS IN: GTP binding, GTPase activity; INVOLVED IN: protein targeting to chloroplast, chloroplast localization; LOCATED IN: chloroplast outer membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AIG1 (InterPro:IPR006703), Chloroplast protein import component Toc34 (InterPro:IPR005688); BEST Arabidopsis thaliana protein match is: translocon at the outer envelope membrane of chloroplasts 33 (TAIR:AT1G02280.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR