K26148

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K26148

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K26148

Determination of introduced cDNA(s)

J033064O15 - Rice Full-length cDNAs - Original: J033064O15

full reading [+] show sequence

GGCAATACTC TCCTCATTAA CTTCTTCCGC GGGACGAGAC ACGAGAGAGA 
GAGAGAGAGA GAGAGAGCCA ACCGCACACT ACTTGAATCC AATCCAATCG 
AATCAAATTA CTAGCCTCTC TTCCACGCCA CGCACACGCA CCCAATCCTC 
TATCGATCGA GACATGGCCT CCACCACCGC CGCCGCCGCC GGCAACGGCA 
GCGGCAGCAT CCTCCCCACC CACACCATCG CCGCCACGGC GCCACCCTTC 
AGAACCCACA AGGACGCCGA CCTGGAATCC AGGAGGCGAC GGCGCCGGCG 
ACGCTGCCTG TGCTGCTGCC TGCTCGTCAC CCTGGTGGTA CTACTCGTGC 
TGGCCATCAC CCTCCTGGTC CTCTTCCTCA CGGTGCTCCG CGTCCGCGAC 
CCCACCACCC GCCTCGTCTC CACCCGCCTC ATCGGCCTCT CCCCGCGCCT 
CTCCTTCCCG GCCATGTCGG TCCAGCTCAA CGTCACGCTC CTCATCACCG 
TGGCGGTGCA CAACCCCAAC CCGGCCTCCT TCACCTACGC CACGGGGGGC 
CACACCGACC TCACCTACAG GGGCGCCCAC GTCGGCGACG CCGAGATCGA 
CCCGGGCCGA ATCCCGAGCC GTGGGGACGC CAACGTCACC ATGGCGCTCA 
CCCTCCAGGC CGACCGCTTC GCCGGCGACC TCACGCAGCT CGTGACGGAC 
GTGATGGGCG GGTCGGTGGC GCTGGAGGCG AGCACTCGGA TCCCCGGGAG 
GGTGGCCATC CTGGGCGTGT TCAAGCGCCA CGCGGTGGCG TACTCGGATT 
GCCATTTCGT GTTCGGCGTC ACGGAGATGG CCGTGCGTAG CCAGCAGTGC 
AGCGACCGCA CCAAGCTCTG ATTGATCATG TGATTCCAAC TTAATTTGCA 
AGTTTCCAAG CACGCAACGT AAGGTGGGCA TGCCACATCG CGACGTGGGA 
CAAGACGAGA AGCCATATTT TGTTGTTTTG TTTACACCAC GCAACTGCTA 
CTAGAAGTAC ATAGAGTATT ACTATATTCT ACACGGGTGG CACATTAGTT 
CGTTATTACA GATAGTATAA GATCAGGAAT TCAGGATTCA GGACTTCCGA 
TTTTCTTCAG TATTTCTTGA TGGGTGTTGG GATTGATTCG ATTCATGTAT 
ATAACACGGT GTGTCAGTTT TGACATATAC GTACATATAC AGTATTTCAC 
C

Gene models with high sequence identity

AT3G05975.1 [+] show detail - Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
E-value: 4e-21; Score: 99.40

InterPro Scan Digest

See the detailed result >

AT3G05975.1

Model type: Protein coding
Short Description: Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
Computational Description: Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 2 (InterPro:IPR004864); BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (TAIR:AT3G54200.1); Has 227 Blast hits to 226 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 227; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link: InterPro Scan - TAIR