K26201

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K26201

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K26201

Determination of introduced cDNA(s)

  • J033149N02 - Rice Full-length cDNAs - Original: J033149N02

    full reading [+] show sequence

    Nucleotide sequence: J033149N02 - full reading 
    GTAGCTAGCG TTGCCCCTGT CTCCTTGCGC CCTTTGCGAT CTCTCCCCAT 
    CGTCGTCTCC TCCGCTCGCC CCGCCGCCTG CGCCGATCTC CGCCCATCCC 
    GCGAGCGAGC AGCGGTGGCG CTGCCCCCTG CTGCTTCCTC GCCGCCCCCC 
    GCCGGTTCTT GGATCAATAT ATGGGTTCAA CTTCAAGGCC AGTTGATGAT 
    GAAGTTCTTG ATGCCGCCAC CGGGGTACAC TACTCTGCGC TCCGTTTGGA 
    AGAGCTTAAC ATGAATGGCT CCGTGTCAGG GGAGGACCAA CCGACAACCT 
    CGGGCGTGGA GAATGGGCAC CAGGAGCCAT TTGTCATTGG TGTCGCTGGG 
    GGTGCATCTT CAGGTAAAAG TACTGTATGC AAGATGATAA TTGATCAGCT 
    ACGTGATCAG CGTGTGGTTG TTGTTACTCA GGAGTCCTTT TATTATGGGT 
    TATCTGATGA GGAATTGGTC CATGTTCATG ATTATAACTT TGATCATCCA 
    GATGCATTTG ATACGGAGTT ACTACTCTCT TGTATGGAGA ACTTGAAACA 
    TGGCAAGGCT GTGGACATTC CTAATTATAA CTTCAAAACA TATAAGAGTG 
    TAGCAAGCGC AAGAAAGGTC AATCCTTCAT ATGTAATTAT TTTGGAAGGT 
    ATTCTGGTTT TCCATGATTC ACGTGTCCGG GACTTGATGA ACATGAAGAT 
    ATTTGTTGAT ACAGATGCTG ATGTGCGATT AACAAGGAGG ATTCGACGTG 
    ACACCATTGA GAAGGGTAGA GATATCAAAA CTGTGCTAGA TCAGTATTCA 
    AAGTTTGTTA AGCCTGCTTT TGAAGACTTC ATCCTCCCAA CCAAGAAGTA 
    TGCTGATATT ATCATCCCAC GAGGTGGAGA TAATGATGTT GCGATTGACT 
    TAATCGTTCA GCATATTCGC ACTAAGCTTG GTCAACATGA TCTCTGTAAA 
    GTACACCCCA ATTTGTATGT CATTCAGACT ACTTATCAGA TACGAGGTAT 
    GCACACAATA ATACGCGATG CTGCCACAAC AACACATGAT TTCATATTCT 
    ATGCCGATCG GTTGATTCGA TTGGTTGTCG AGCATGGTCT TGGTCATCTT 
    CCATTCAAGG AAAAACAGGT CATAACTCCA ACTGGTTCTG TTTACACTGG 
    GGTAGAGTTC TCTAAAAGAT TGTGCGGTAT CTCAGTGATT AGAAGTGGTG 
    AGAGTATGGA GAATGCATTG CGGGCATGCT GTAAAGGTAT AAAAATTGGG 
    AAGATTCTTA TTCACAGAGA AGGAGACAAT GGCAAACAGC TAATCTATCA 
    CAATGTACCA AAAGATATAG CAAACAGGCA TGTTCTATTG TTGGATCCCA 
    TACTGGGAAC AGGAAATTCA GCTGTTCAAG CTATATCCCT ACTCTTGAAG 
    AAGGGTGTAC AGGAAACAAA CATTATCTTT CTGAATCTTA TATCAGCTCC 
    CCAAGGAGTG CATGTCGTTA GCAAGAGATT TCCGAGAGTC AAGATCGTGA 
    CATCAGAAAT TGACTTTGGT CTGAACGATG ATTTCCGCGT CATCCCTGGA 
    ATGGGTGAGT TTGGAGATAG GTACTTCGGA ACAGATGATT ATCAGTCATC 
    AACACCATTC TTTTGCGACG AGAAAAATCG TGTCAGGCTT TTGTGAACAA 
    TGCAGAGACA CAGATCCTGC CGGCTGCATC TCCATTTTTT GAGAAACTTA 
    TTTTTTACAT TTCGAAAGTC AGATCCCAAT ATTAATGTAT TCATTACCAG 
    AAACTCTGTA TCGGTTAACA TTACAGACCG CCTCATAAAT CGAGCAAATT 
    CCAATTTTGT TTTTCTGATA TCGTCTGACT TCTGCGCTTG CAGTTTGCTG 
    TGATTTCATC TGTATGTGAT CCGCTACTTC TCTTTCCTAG AATTGGAGAT 
    GATTGGCTTG TATCAGGGCC AAATTTTGTA ATCTCTGATT TGTTATCTTT 
    CAGATTAGCA ATGCAATGCT TATTTCGG

    Gene models with high sequence identity

    1. AT1G55810.3 [+] show detail - uridine kinase-like 3
      E-value: 0; Score: 695.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther Uridine kinase 1.1e-217
    HMMPanther URIDINE KINASE RELATED 1.1e-217
    FPrintScan Uridine kinase 1.6e-27
    FPrintScan Uridine kinase 1.6e-27
    FPrintScan Uridine kinase 1.6e-27
    FPrintScan Uridine kinase 1.6e-27
    FPrintScan Uridine kinase 1.6e-27
    FPrintScan Uridine kinase 1.6e-27
    Gene3D no description 1.7e-62
    Gene3D no description 1.7e-67
    superfamily P-loop containing nucleoside triphosphate hyd 1.9e-63
    superfamily PRTase-like 9e-63
    HMMPfam Phosphoribulokinase/uridine kinase 6.5e-46
    HMMPfam Phosphoribosyltransferase 0.000027
    HMMTigr Uridine kinase 2.8e-89

    See the detailed result >

    AT1G55810.3

    Model type
    Protein coding
    Short Description
    uridine kinase-like 3
    Curator Summary
    One of the homologous genes predicted to encode proteins with UPRT domains (Uracil phosphoribosyltransferase). Five of these genes (At5g40870, At3g27190, At1g55810, At4g26510 and At3g27440) show a high level of identity, and are annotated as also containing a N-terminal uracil kinase (UK) domain. These genes are referred to as UKL1 (UK-like 1), UKL2, UKL3, UKL4 and UKL5, respectively.
    Computational Description
    uridine kinase-like 3 (UKL3); FUNCTIONS IN: uracil phosphoribosyltransferase activity, phosphotransferase activity, alcohol group as acceptor, kinase activity, ATP binding; INVOLVED IN: biosynthetic process, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoribulokinase/uridine kinase (InterPro:IPR006083), Uridine kinase (InterPro:IPR000764); BEST Arabidopsis thaliana protein match is: uridine kinase-like 4 (TAIR:AT4G26510.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR