K26223

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K26223

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased width (PATO:0000600)
    (Seed::Shape::wide)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K26223

Determination of introduced cDNA(s)

  • J033075H07 - Rice Full-length cDNAs - Original: J033075H07

    full reading [+] show sequence

    Nucleotide sequence: J033075H07 - full reading 
    GCTCTCTCTC TCTCCTACTG TAGGCCACCA CCACCGCGAC CGCACGAGTC 
    AACCTCACGG CAGCCAAGCG TTTGGTTGGG GGGATCGGAG CGGCGGCGGC 
    GGCGATGCAG TCGCTGCAGG ACAAGGCGTC GGAGTGGAGC GGCGTGGCGG 
    CGGGGGATGC GTTCGCCATC GACGATGGGA ACGTCTTCGA GGCGCTGGGC 
    GGCACCACGC AGCCGTTCGT CGACCTCTCC ACCAACTTCT ACACCAGGGT 
    TTATGAGGAC GAGGAGGAGT GGTTCCGGCA GATCTTCGCG GGGTCGAAGA 
    AGGAGGACGC GATCCGGAAC CAGTACGAGT TCTTGGTGCA GCGCATGGGC 
    GGCCCGCAGC TCTTCTCCCA GAGGAGAGGA CATCCTGCCC TGATAGCACG 
    GCATCGACCA TTCCCTGTTA CCCACCAGGC TGCAGAGCGA TGGCTGCACC 
    ATATGCAGCA AGCTGTGGAT ACTACTGACA GCATAGACGC TGCCACAAAA 
    ACCAAAATGA TGTATTTTTT CAGGCACACT GCATACTTCC TTGTTGCCGG 
    AAATGAGATG ACAAGGCAAG GCCATGGAAC TTCCTGCAAG TGCAAACATG 
    GAGAAAGCAA ACCAGCAGAA TAACGATCGA TTCATGCCTC TGGCCAGTAA 
    GGCATCTGGA TAATAAACGA TTCGAGCCTT TAGCAGCCTA TCCTGGTGTT 
    ATAGAAAAAA AAAACCATGG ACGATGGAAT TCAGACCATC TATTCATTCA 
    CAAAAACAGT TGAGCTAACT GTTGTAGGCT TACAGCCACT CTCGAACACG 
    GAGCAACCCA AAATTGATAG AACCTGCCTC TGGAGGAAGT TGCAAACTTG 
    CAATAGTTAT ATCATACTCT CTATATTG

    Gene models with high sequence identity

    1. AT4G32690.1 [+] show detail - hemoglobin 3
      E-value: 1e-64; Score: 243.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Globin 3.4e-29
    superfamily Globin-like 2.2e-27
    HMMPfam Globin, truncated bacterial-like 1e-37

    See the detailed result >

    AT4G32690.1

    Model type
    Protein coding
    Short Description
    hemoglobin 3
    Curator Summary
    Encodes a hemoglobin (Hb) with a central domain similar to the 'truncated Hbs of bacteria, protozoa and fungi. The 3D structure of these types of Hbs is a 2-on-2 arrangement of alpha-helices as opposed to the 3-on-3 arrangement of the standard globin fold. This type of Hb is not found in animals or yeast.
    Computational Description
    hemoglobin 3 (GLB3); CONTAINS InterPro DOMAIN/s: Globin, truncated bacterial-like (InterPro:IPR001486), Globin-like (InterPro:IPR009050), Globin (InterPro:IPR012292); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR