K26223

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K26223

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • increased width (PATO:0000600)
    (Seed::Shape::wide)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K26223

Determination of introduced cDNA(s)

  • J033075H07 - Rice Full-length cDNAs - Original: J033075H07

    full reading [+] show sequence

    Nucleotide sequence: J033075H07 - full reading
    GCTCTCTCTC TCTCCTACTG TAGGCCACCA CCACCGCGAC CGCACGAGTC 
    AACCTCACGG CAGCCAAGCG TTTGGTTGGG GGGATCGGAG CGGCGGCGGC
    GGCGATGCAG TCGCTGCAGG ACAAGGCGTC GGAGTGGAGC GGCGTGGCGG
    CGGGGGATGC GTTCGCCATC GACGATGGGA ACGTCTTCGA GGCGCTGGGC
    GGCACCACGC AGCCGTTCGT CGACCTCTCC ACCAACTTCT ACACCAGGGT
    TTATGAGGAC GAGGAGGAGT GGTTCCGGCA GATCTTCGCG GGGTCGAAGA
    AGGAGGACGC GATCCGGAAC CAGTACGAGT TCTTGGTGCA GCGCATGGGC
    GGCCCGCAGC TCTTCTCCCA GAGGAGAGGA CATCCTGCCC TGATAGCACG
    GCATCGACCA TTCCCTGTTA CCCACCAGGC TGCAGAGCGA TGGCTGCACC
    ATATGCAGCA AGCTGTGGAT ACTACTGACA GCATAGACGC TGCCACAAAA
    ACCAAAATGA TGTATTTTTT CAGGCACACT GCATACTTCC TTGTTGCCGG
    AAATGAGATG ACAAGGCAAG GCCATGGAAC TTCCTGCAAG TGCAAACATG
    GAGAAAGCAA ACCAGCAGAA TAACGATCGA TTCATGCCTC TGGCCAGTAA
    GGCATCTGGA TAATAAACGA TTCGAGCCTT TAGCAGCCTA TCCTGGTGTT
    ATAGAAAAAA AAAACCATGG ACGATGGAAT TCAGACCATC TATTCATTCA
    CAAAAACAGT TGAGCTAACT GTTGTAGGCT TACAGCCACT CTCGAACACG
    GAGCAACCCA AAATTGATAG AACCTGCCTC TGGAGGAAGT TGCAAACTTG
    CAATAGTTAT ATCATACTCT CTATATTG

    Gene models with high sequence identity

    1. AT4G32690.1 [+] show detail - hemoglobin 3
      E-value: 1e-64; Score: 243.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Globin 3.4e-29
    superfamily Globin-like 2.2e-27
    HMMPfam Globin, truncated bacterial-like 1e-37

    See the detailed result >

    AT4G32690.1

    Model type
    Protein coding
    Short Description
    hemoglobin 3
    Curator Summary
    Encodes a hemoglobin (Hb) with a central domain similar to the 'truncated Hbs of bacteria, protozoa and fungi. The 3D structure of these types of Hbs is a 2-on-2 arrangement of alpha-helices as opposed to the 3-on-3 arrangement of the standard globin fold. This type of Hb is not found in animals or yeast.
    Computational Description
    hemoglobin 3 (GLB3); CONTAINS InterPro DOMAIN/s: Globin, truncated bacterial-like (InterPro:IPR001486), Globin-like (InterPro:IPR009050), Globin (InterPro:IPR012292); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR