K26241

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	decreased length (PATO:0000574) (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K26241

Determination of introduced cDNA(s)

J023139P14 - Rice Full-length cDNAs - Original: J023139P14

full reading [+] show sequence

GATCGCCACC TCGGCGCATC CACGCAACCC ACCCGTCGCG AGTCGCGAGC 
AGATCAAAAA CCCCATCGCC GCGGCGATCA CCGGAGGGAC CAGGCCGGGC 
GGCCATCCGT ACTCCGCCGC GATGATGAAC GACGGCGATG TGGCGCGGCA 
GCTGAAGCAG ATGACGGACT TCATCCGCCA GGAGGCCGTC GAGAAGGCCG 
CCGAGATCGA GGCCGCCGCC GCCGAGGAAT TTCAAATCGA GAAACTACAG 
CTGGTGGAAG CTGAAAAGAA GAGGATCAGG TTGGAATTTG AACGGAACGA 
GAAGCAAGGT GATATCAAGA AGAAAATTGA ATACTCAAAG CAGCTCAATG 
CTTCCCGACT TGAAGTTCTG CAAGCTCAAG ATGATTTAGC GATGTCTATG 
TTGGAGGCAG CAGGGAAAGA GCTACTGTAC ATAACCCGAG ATCACCATGT 
ATACAAGAAT CTTCTTAGGA TATTTATTGT TCAGAGCTTG CTGCGTTTGA 
AGGAGCCAGC TGTGATTCTG CGCTGCAGGA AGGAGGATCG TGAGCTTGTT 
GAATCAGTTT TGGAGTCTGC AAAGAATGAA TATGCAGACA AAGCAAATAT 
ATATCCTCCT GAAATAATGG TAGACCGTAA TGTCTATCTG CCTCCTGCTC 
CCAGTCATTA TGAGGCACAT GGACCCTCCT GCTCTGGTGG AGTTGTGCTA 
GCTTCCCGAG ATGGAAAGAT AGTCTGTGAA AATACATTGG ATGCTAGACT 
AGAGGTGGTT TTCAGAAAGA AGCTACCAGA GATTCGTCGA AGCCTTCTTG 
GGCAGGTAGC TGCTTGACCG ATTCATAAAT ACAGGATGCT GCACAATACC 
GTTTTCTTCT GCATGATGGT GTCAAAGAAA GCATTTTGGC AGTTAAAATG 
ATTTATCACT TTGCTCAAGT CTGTTACATA TATATTTTTT ATAGGGAGCC 
ACTGTCATCA AACTACAGAC CTTAGTATTG CCGATAGCGA ATAAATTGAT 
ATGTTCATGT TGCTCACGAT TTCTCATAAT AAGGCCTAAG AGGTGTAGTT 
ATCCCATTTA TATGTTCATC TTTTCTCACA GAAGACAATC CATTGTCATT 
TATTCATCTG TTATTTGTTT TTGTTTTCAT GGAAATAATA TACCAAGGCC 
TCTCTTAGAA TG

Gene models with high sequence identity

AT4G11150.1 [+] show detail - vacuolar ATP synthase subunit E1
E-value: 1e-71; Score: 267.00

InterPro Scan Digest

Program	Description	E-value
Coil	coiled-coil	0
HMMPanther	VACUOLAR ATP SYNTHASE SUBUNIT E	2.2e-93
HMMPfam	ATPase, V1/A1 complex, subunit E	6.4e-67

See the detailed result >

AT4G11150.1

Model type: Protein coding
Short Description: vacuolar ATP synthase subunit E1
Curator Summary: Encodes a vacuolar H+-ATPase subunit E isoform 1 which is required for Golgi organization and vacuole function in embryogenesis.
Computational Description: vacuolar ATP synthase subunit E1 (TUF); FUNCTIONS IN: proton-transporting ATPase activity, rotational mechanism; INVOLVED IN: in 7 processes; LOCATED IN: in 7 components; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 18 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, V1/A1 complex, subunit E (InterPro:IPR002842); BEST Arabidopsis thaliana protein match is: vacuolar H+-ATPase subunit E isoform 3 (TAIR:AT1G64200.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR