K26246

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K26246

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K26246

Determination of introduced cDNA(s)

  • J033100G21 - Rice Full-length cDNAs - Original: J033100G21

    full reading [+] show sequence

    Nucleotide sequence: J033100G21 - full reading 
    GGCCATTTCC TCTCGCTTGC AATCTCACCA TTAACAGGCT GTACCAGGAA 
    GCATCCATTT CGATCGCAAG AAGAATAATG GGTGAGAGCA GAGGCAGCAT 
    TGCCTTCTTC GCGAGCTACA GGCCACCGGT GGCTCTGGAC ATATTCTGCT 
    GCCCAGCTCC ACCGTCTAGC CCGAAGGACG AGCTGCACCT GACGGACGGC 
    GACTCCTACA ACTACAACTG CCAGCCCATC CCACCGGCGG CGCTCAAGAC 
    GGTCGTGGAG CGCCTCGGCG TGTCCCGCGG CGACGCCGTC GAGGGCGACA 
    TCGATTCCGG CCGCATCACC GGCCTCGTCT TCGTCTCCGA GAGGGAGCAC 
    AACCTCGAGA CGCTCCACAT CGCCCTGCGC TTCAACGACG ACGGCGAGGT 
    CCAGGTCTTC TCCCTGGCCG ACGCCTATGG CGGCGACGGC CTGTTCAGCG 
    GCGCCCGCAT GGAGGACAGC GGCTGCATTG CCGGCGGCTA CGAGGTGGAT 
    GGCCGCACGG TTGACCATTA CCTCGTGTAT GTGTCCACCA AGGAGCCAGT 
    GCGAGAACGT CGCAGCCCGT GGAACGTCGC TTACAAGACC AATCTTAGAA 
    CCGGCGAGAC TGAACGCCTC ACACCACCAG GAACATTTGA TATAAGCCCA 
    TCTGTGTCAC CATCCGGGAA GAAAGTAGCG GTGGCTTCGT ACCAAGGGAA 
    GAAATGGGAC GGTGAGATCA AGAACCTCAA CACCAACATC TACGTGATGA 
    GCTTGGAGAA CCCGTCTCAG GATCGCGAGC GGGTGATCGA GAACGGCGGC 
    TGGCCGTCGT GGGGCAGCGA GGACGTGATC TTCTTCCACA GGAAGGACGG 
    CGACGGGGAG AACAGCTGCT GGGGCGTGTT CCGGCACACC CTGAGCACCG 
    GCGAGACCGT CCGGGTGACG CCGGCGGCGT TCGACCCGGT GACTCCGGCG 
    GCCATCGACG AGACCAGGGT GGCGGTGGCG GCCATCCGCC AGAAGTCCGA 
    GTTCAGTGAT GTCCGCGTCG AGGCACAGTA CAGGCACATC GAGGTGTTCG 
    ACATGAGATC GCCGGAGCAG CCGATGCAGA TCACCCGGAA CACCAGGCCA 
    AAGGCCGACC ATTTCAACCC CTTCGTGATG GACGGTGGCA AGTTCATTGG 
    TTACCACCGT TGCAAAAGCG AGCTCCTCCA GCACGGCGAT GATCTCCCGA 
    GAAAATTTCA CAAGCTGCAA TCCCCACACG AAGATGTCGG TGTGTTCAGG 
    GTGTCCGGTG TGTTCCCAAC ATTTTCCAAA GATGGTTCTC AGCTTGCCTT 
    CGTTGACAAC GAGTTCAAAT CCGTGTGGCT GGCCGATAGC CAAGGGATGC 
    GTGTCGTCTT CAAGACTGAT GGCCCAGACA GCGTCTTCTC ACCGCTGTGG 
    AATTCCAAGA AGGATATACT CTATGTGTGC ATGGGACCTT CTTTCAAAGC 
    CAGTGAAACG TTGGAGATCC ATTCCATACA CAATGTATCC ACTGGTGACC 
    GGAAGTCGCG GCAGCTCACG TTCGGAGGAT TCAACAACGC CTTCCCTTCC 
    ACCAATCCAG ACGGAACGAA ATTTGTTTTC CGGTCGACAA GAGATGGAGG 
    GGCAAAGTAC AGCAAGAACC TGTACATAAT GGAGGACGCC GACGCCGGAG 
    AAGGCGAGGA TGGCAGCCAG TCGACGGTGA CGCGGATGAC CGCCGGCGAG 
    TGGACGGACA CGCACTGCCA GTGGTCTCCG AACGGGAAGT GGATCGTGTT 
    CTCGTCGAAC CGGGACAGGC CGGCGGACGC GCCGGAGCGC GACCACGGCC 
    TCGACCCGGG CTACTTCGCC GTCTACCTGA TGGACGTGGC GTCCCGGTCG 
    GTGGTGAGGG TGATCAGGAG CGGGTACGAC GTCGCCGGGC ACGTGAACCA 
    CCCGGTGTTC AGCCCGGACG GGCGGAGCAT CGCGGTGACG TCCGACCTCG 
    CCGCGGTGAC CGCCGACCCG ATGTCGCTGC CGCTCTTCCT GCACTCCGTC 
    AGGCCCTACG GCGACATCTT CACCGTGGAC ATCGACCCGG ACGACATGGC 
    GAGGAACGAG GACGTGGAGG GGTTCGTCCG CGTCACGCAC AGCCGGTACG 
    AGAACTCCAC GCCGGCGTGG ACCGTGTTCT CCACGCACGA CCCGCACGCG 
    CAGTGGAACC TCCTCGTCGT GGAGGACGAG CACGTCCCGT CGTGCCCGTA 
    CGCGCATCCG GACGGAGGCG AGAGTTGGCA CATGACCGGC CAGATTTGCA 
    TCCCCAAAAG GCACTGTTAA TTCTCTCGCC ATTGCATTAC TACGTTTCTT 
    GTTTAGAAGC GTTGTTGTTT GTTTAACGTA CGATATTTAT TATCTGAAGA 
    CGTTTTCAGC ATTTGCTTGG ATGTACAACG TGTGTATGAA CTGTTTGCGA 
    TGTAATATTT GTTTATTTGC TTGAGATGTA CTTTTTTCTT GTCAGTAAGA 
    CTTTTGCATA AATCGAAAAA ATAATCACAC GAGTGTAATA CTACG

    Gene models with high sequence identity

    1. AT1G21680.1 [+] show detail - DPP6 N-terminal domain-like protein
      E-value: 5e-97; Score: 352.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily TolB, C-terminal domain 4.5e-22
    superfamily Tricorn protease N-terminal domain 6.9e-11
    Gene3D Six-bladed beta-propeller, TolB-like 1.8e-08
    Gene3D Six-bladed beta-propeller, TolB-like 2.4e-26
    HMMPfam WD40-like Beta Propeller 0.031
    HMMPfam WD40-like Beta Propeller 0.0012
    HMMPfam WD40-like Beta Propeller 4.1e-06
    HMMPfam WD40-like Beta Propeller 0.034

    See the detailed result >

    AT1G21680.1

    Model type
    Protein coding
    Short Description
    DPP6 N-terminal domain-like protein
    Computational Description
    DPP6 N-terminal domain-like protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, vacuole, plant-type cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40-like Beta Propeller (InterPro:IPR011659), Six-bladed beta-propeller, TolB-like (InterPro:IPR011042); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G21670.1); Has 9463 Blast hits to 5353 proteins in 1263 species: Archae - 75; Bacteria - 6165; Metazoa - 47; Fungi - 60; Plants - 122; Viruses - 0; Other Eukaryotes - 2994 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR