K26247

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K26247

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased width (PATO:0000600)
    (Seed::Shape::wide)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K26247

Determination of introduced cDNA(s)

  • J023031B11 - Rice Full-length cDNAs - Original: J023031B11

    full reading [+] show sequence

    Nucleotide sequence: J023031B11 - full reading 
    TCAGGTCCTC GGCCATGGCG TTCTTCTCCC ATCACCACCT CCAGCAGCCG 
    CATCCTCAGG CTCCGCCGCC GCCGCCGCCG CAGCAGCAGC AGCAACCGGT 
    GCCCCCTTCC TTCAGGAACG CGCTGCCGGT GCCGGTAGAT GGGCAGATCC 
    CGGCGCCTCT TCCCTTCTTC AACCCGCCGC CGGCCTTCCA GGACCAGCCC 
    GCGCAGCCAC CACTGGTGGA CGCGATGGGG CTTACGGCCG CGGCGGGGCT 
    AGGGTGGAGG CAGCCTAGGG AGCAGGAGCT GCTAGGAGAG AACTCCCAGA 
    TGTCGTCCAT CGATTTCCTG CAGACGGGCT CCGCGGTGTC CACTGGGCTG 
    GCGCTCTCTC TGGAGGACAG ACGCCATGGC GGTGGCAGCG GCGCTGGGGC 
    TGGGAACTCC TCCGGCGATT CGCCGTTGCT CCTGCTCCCG ATGTTGGATG 
    ATGACATCTC TCGCGAGGTT CAGCGGCTCG ATGCAGATAT GGACCGCTTC 
    ATCAAGGCCC AGAGTGAGCG GCTTAGGCAG TCCATATTGG AGAAAGTTCA 
    GGCAAAGCAA TTTGAGGCGC TGGCCTCTGT TGAGGATAAG ATACTTAGAA 
    AAATACGGGA TAAAGAGGCA GAAGTGGAGA ACATTAACAA AAGGAACTCT 
    GAACTTGAGG ACCAGATTAA ACAGTTGGCA GTGGAAGTTG GTGCGTGGCA 
    GCAAAGGGCC AAGTACAATG AGAGCATGAT AAACGCACTG AAGTACAACT 
    TGGAACAGGT ATGTGCCCAT CAAAGCAAGG ATTTCAAAGA AGGTTGTGGT 
    GATAGCGAGG TGGATGACAC GGCATCCTGT TGCAATGGTG GTGCCGCCAA 
    TTTGCAACTA ATGCCGAAGG AGAACAGACA CTCCAAAGAT TTGACCGCAT 
    GTAGAGTCTG CAAGTCAAGC GAGGCTTGCA TGCTATTGTT GCCTTGTCGG 
    CATCTTTGCC TTTGCAAGGA GTGCGAAAGC AAGCTGAGCT TCTGCCCGCT 
    ATGCCAGTCT TCGAAAATAC TTGGCATGGA GATATATATG TAGAATAGAA 
    TTTATGTATT ACTCGAGTAT CGTCCCAGAT ACTGCTGTGT TTATACAACA 
    GTCTATTGTT AAACTGTACC ACTAGTATGG ACCAACATGA GATGCCACTG 
    GATCGAAAAG ACCACCATTT ATGGTGGATG TACTGCTGCA AATGTTACTT 
    T

    Gene models with high sequence identity

    1. AT1G45976.1 [+] show detail - S-ribonuclease binding protein 1
      E-value: 1e-64; Score: 244.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther UNCHARACTERIZED RING ZINC FINGER-CONTAINING P 0.00000019
    HMMPIR S-ribonuclease binding protein, SBP1, pollen 2e-165
    ProfileScan Zinc finger, RING-type 10.114
    Coil coiled-coil 0

    See the detailed result >

    AT1G45976.1

    Model type
    Protein coding
    Short Description
    S-ribonuclease binding protein 1
    Computational Description
    S-ribonuclease binding protein 1 (SBP1); FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), S-ribonuclease binding protein, SBP1, pollen (InterPro:IPR017066); BEST Arabidopsis thaliana protein match is: SBP (S-ribonuclease binding protein) family protein (TAIR:AT1G60610.3); Has 1148 Blast hits to 1148 proteins in 158 species: Archae - 2; Bacteria - 4; Metazoa - 532; Fungi - 2; Plants - 446; Viruses - 53; Other Eukaryotes - 109 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR