K26302

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K26302

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
  • present in greater numbers in organism (PATO:0000470)
    (Cauline leaf::Number::many)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)
    (Seed::Number::few)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
T2  
cauline leaf (PO:0000013)
  • increased size (PATO:0000586)
    (Cauline leaf::Shape::large)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K26302

Determination of introduced cDNA(s)

  • J033023H03 - Rice Full-length cDNAs - Original: J033023H03

    full reading [+] show sequence

    Nucleotide sequence: J033023H03 - full reading
    GAATCTCCTC CTCCTCTCCC TCTCTCTTTT TTAGTTCGCC GCCGAACTCT 
    CCAAAACCCC CACGAAAACC CTCGCTTCCC ACCGACTCCA TGTGGCGCCT
    CCGGTCGCGG ACGGCGGCGG CGGCGGCCGT CATTGCCGCG TCCGCGGCGT
    CGCTCGCCGA CGTCGCCTAC GCGGACAGCG GCTACTCCTT CTTCCGCCGC
    AGCTCCCCCC CGCCTCCACC TCCCGCCGCC GCCGCCGCCG CCGCTGCTTC
    GGAGGACTCT GGCACGGAGG TGGCCGTCGA GGTGGATTCC AGCGGGTTCG
    ACCCCGAGAG CCTGGAGCGG GCGGCCAGGT TGCTGCGGAA GCTCAACTCG
    TCGAAATACG CGAAGCAGCT GTTTGAGCTG ATGCGCATGC AGGAGAAGAC
    CCGGCTTGCG GAGCTGGAGG CCGAGAAGGT TCAGTACATC ATCCAACAAC
    ACCTCAGGGA CATTGAGAGG CAACAGAAAG AAGGTGAAAA ATTCAGAGAG
    AGTTTGCAGC AGCAAGCTCA AGCAGAGGCA CAAAAGTTAC GTTATGACGA
    TGAATTAGCT AGGAAAAGAA TGCAGACGGA GCGTGAAGCA CAAAGGCGAC
    AGGATGCAGA ACTTGTGAAG ATGCAAGAGG CAGCTGCCCT TAGGAAAGAA
    GAAGTTAGGC GTACCACAGA AAAGAAGATT TTAGAAAAAA TGCTAGAGGA
    TGAGAAAGAA AAGGCTCTCT TAAAGAAACA AAATATCCAA GCTAACGCTG
    AAGCAAAAGG TGAAGCCCTT ACTCGTGAAG CAAAGGCTTT AGAAGACTAC
    AACAGAAAGA TGCTCCTGGA ACGTATAAAT GGCGACAAAG AGAAGTGGAT
    TGCTGCAATA AATACTACTT TTTCACACAT TGAAGGTGGG TTTAGGATGC
    TGTTGACTGA CAGGAGTAAA TTATTGATGG GTGTTGGAGG AGTTACTGCG
    CTCGCTGCTG GAATTTATAC TACCAGGGAA GGAGCAAAAG TTACATGGGG
    TTACATTAAT AGAATCTTGG GTCAACCTTC ACTGATCCGT GAATCATCTA
    TGCCAAAGTT TCCACTTTCA AGGTTTAAGG CTCTCAAATC TACTTCAGCA
    TCTCTGTCAG GAGGTGCAGG CTTTGAGAAT GTTATTCTTC ATCCTTCACT
    GAAACGGAGG ATTGAACATC TTGCACGAGC TACAGCAAAT ACAAAGTCGC
    ACGATGCACC ATTTCGCAAC ATGCTGTTCT ATGGTCCCCC TGGAACTGGG
    AAAACATTAG TTGCTAGGGA GATGGCACGC AAATCTGGCT TGGATTATGC
    CATGATGACG GGAGGAGATG TTGCACCCTT AGGATCAGAA GCTGTTACCA
    AAATACATCA AATTTTTGAC TGGGCTAAGA AGTCAAGGAA GGGCATGCTG
    CTTTTCATTG ATGAGGCTGA TGCGTTCTTG TGCGAGCGCA ACAGCACCCA
    CATGAGCGAA GCTCAGCGGA GTGCTCTCAA TGCACTACTA TTTCGAACTG
    GAGACCAGTC GAGGGATATT GTCCTTGTCC TTGCAACAAA CCGACCTAGT
    GATCTTGATG CTGCTATTAC GGACCGCATT GATGAAGTTA TTGAGTTCCC
    TTTACCTGGG GAGGAGGAGA GGTTCCAGCT GCTCAGGTTA TACTTAAACC
    ACTATATGCT CAAGGAAGAT GGAAAAAACT CGTTTTGGGA CTCACTGCTG
    AAAAAGCAAC GGCAGAAGAT ACAAGTTAAG GACATAAGTG ATGATTTGCT
    CAGGGAGGCT GCCAGGAAGA TCAATGGATT CTCTGGCAGA GAGATTGCGA
    AGCTTATGGC CAGTGTGCAA GCTGCTGTTT ATGGCCGCCC TGACTGTGTG
    TTGGATCCCC AGTTGCTTAT GGAGGTAGTT GAATACAAAG TGGCTGAGCA
    TCATCAGCGC ATCAAGCTTG CTTCTGAGAC TTCAACTTGA GCAATGTTAT
    AGATTTTATC AGAAAGCAGC AGTCCTTTTC AGATCTACTG TCCCCATATA
    TATGTTCTGA TATGAGGAAT GGAGTGAGAT ATAGTCAGTT TCCTCCAGCT
    GACTTCGATA GAAGTTGAAA TTTAGAACAC ACCGGATACT GATGTTCTTC
    TTTGCGGGGG GTATGACCTA GGCTTGTCCG GTTCCAATTT TGTTCCATCT
    CTTTGCCTGT AGCATATTTA TGGTGGTTTT TATGGAAATA CAGGCAAATA
    GGTAAGACTG AGATGCGCAT GCTGAAAATC TTATTTGACT GAAGTGGTTC
    AACCATTCAT CTTATTTGTT AGAATTTGAT TTTGTCTTCA TTATCATAGA
    TGATGAAAAG TTGAACTTAC CG

    Gene models with high sequence identity

    1. AT2G18330.1 [+] show detail - AAA-type ATPase family protein
      E-value: 0; Score: 715.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan ATPase, AAA-type, conserved site 0
    HMMSmart ATPase, AAA+ type, core 0.000000000000003
    Gene3D no description 7.9e-26
    HMMPfam Protein of unknown function DUF3523 2.1e-107
    HMMPfam ATPase, AAA-type, core 3.1e-26
    Coil coiled-coil 0
    Coil coiled-coil 0
    superfamily P-loop containing nucleoside triphosphate hyd 8e-44
    HMMPanther PUTATIVE ATP-ASE 6.2e-258

    See the detailed result >

    AT2G18330.1

    Model type
    Protein coding
    Short Description
    AAA-type ATPase family protein
    Computational Description
    AAA-type ATPase family protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960), Protein of unknown function DUF3523 (InterPro:IPR021911); BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT4G36580.1); Has 47815 Blast hits to 38452 proteins in 3171 species: Archae - 1435; Bacteria - 14558; Metazoa - 11715; Fungi - 4870; Plants - 3045; Viruses - 138; Other Eukaryotes - 12054 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR