K26302

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K26302

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
  • present in greater numbers in organism (PATO:0000470)
    (Cauline leaf::Number::many)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)
    (Seed::Number::few)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
T2  
cauline leaf (PO:0000013)
  • increased size (PATO:0000586)
    (Cauline leaf::Shape::large)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K26302

Determination of introduced cDNA(s)

  • J033023H03 - Rice Full-length cDNAs - Original: J033023H03

    full reading [+] show sequence

    Nucleotide sequence: J033023H03 - full reading 
    GAATCTCCTC CTCCTCTCCC TCTCTCTTTT TTAGTTCGCC GCCGAACTCT 
    CCAAAACCCC CACGAAAACC CTCGCTTCCC ACCGACTCCA TGTGGCGCCT 
    CCGGTCGCGG ACGGCGGCGG CGGCGGCCGT CATTGCCGCG TCCGCGGCGT 
    CGCTCGCCGA CGTCGCCTAC GCGGACAGCG GCTACTCCTT CTTCCGCCGC 
    AGCTCCCCCC CGCCTCCACC TCCCGCCGCC GCCGCCGCCG CCGCTGCTTC 
    GGAGGACTCT GGCACGGAGG TGGCCGTCGA GGTGGATTCC AGCGGGTTCG 
    ACCCCGAGAG CCTGGAGCGG GCGGCCAGGT TGCTGCGGAA GCTCAACTCG 
    TCGAAATACG CGAAGCAGCT GTTTGAGCTG ATGCGCATGC AGGAGAAGAC 
    CCGGCTTGCG GAGCTGGAGG CCGAGAAGGT TCAGTACATC ATCCAACAAC 
    ACCTCAGGGA CATTGAGAGG CAACAGAAAG AAGGTGAAAA ATTCAGAGAG 
    AGTTTGCAGC AGCAAGCTCA AGCAGAGGCA CAAAAGTTAC GTTATGACGA 
    TGAATTAGCT AGGAAAAGAA TGCAGACGGA GCGTGAAGCA CAAAGGCGAC 
    AGGATGCAGA ACTTGTGAAG ATGCAAGAGG CAGCTGCCCT TAGGAAAGAA 
    GAAGTTAGGC GTACCACAGA AAAGAAGATT TTAGAAAAAA TGCTAGAGGA 
    TGAGAAAGAA AAGGCTCTCT TAAAGAAACA AAATATCCAA GCTAACGCTG 
    AAGCAAAAGG TGAAGCCCTT ACTCGTGAAG CAAAGGCTTT AGAAGACTAC 
    AACAGAAAGA TGCTCCTGGA ACGTATAAAT GGCGACAAAG AGAAGTGGAT 
    TGCTGCAATA AATACTACTT TTTCACACAT TGAAGGTGGG TTTAGGATGC 
    TGTTGACTGA CAGGAGTAAA TTATTGATGG GTGTTGGAGG AGTTACTGCG 
    CTCGCTGCTG GAATTTATAC TACCAGGGAA GGAGCAAAAG TTACATGGGG 
    TTACATTAAT AGAATCTTGG GTCAACCTTC ACTGATCCGT GAATCATCTA 
    TGCCAAAGTT TCCACTTTCA AGGTTTAAGG CTCTCAAATC TACTTCAGCA 
    TCTCTGTCAG GAGGTGCAGG CTTTGAGAAT GTTATTCTTC ATCCTTCACT 
    GAAACGGAGG ATTGAACATC TTGCACGAGC TACAGCAAAT ACAAAGTCGC 
    ACGATGCACC ATTTCGCAAC ATGCTGTTCT ATGGTCCCCC TGGAACTGGG 
    AAAACATTAG TTGCTAGGGA GATGGCACGC AAATCTGGCT TGGATTATGC 
    CATGATGACG GGAGGAGATG TTGCACCCTT AGGATCAGAA GCTGTTACCA 
    AAATACATCA AATTTTTGAC TGGGCTAAGA AGTCAAGGAA GGGCATGCTG 
    CTTTTCATTG ATGAGGCTGA TGCGTTCTTG TGCGAGCGCA ACAGCACCCA 
    CATGAGCGAA GCTCAGCGGA GTGCTCTCAA TGCACTACTA TTTCGAACTG 
    GAGACCAGTC GAGGGATATT GTCCTTGTCC TTGCAACAAA CCGACCTAGT 
    GATCTTGATG CTGCTATTAC GGACCGCATT GATGAAGTTA TTGAGTTCCC 
    TTTACCTGGG GAGGAGGAGA GGTTCCAGCT GCTCAGGTTA TACTTAAACC 
    ACTATATGCT CAAGGAAGAT GGAAAAAACT CGTTTTGGGA CTCACTGCTG 
    AAAAAGCAAC GGCAGAAGAT ACAAGTTAAG GACATAAGTG ATGATTTGCT 
    CAGGGAGGCT GCCAGGAAGA TCAATGGATT CTCTGGCAGA GAGATTGCGA 
    AGCTTATGGC CAGTGTGCAA GCTGCTGTTT ATGGCCGCCC TGACTGTGTG 
    TTGGATCCCC AGTTGCTTAT GGAGGTAGTT GAATACAAAG TGGCTGAGCA 
    TCATCAGCGC ATCAAGCTTG CTTCTGAGAC TTCAACTTGA GCAATGTTAT 
    AGATTTTATC AGAAAGCAGC AGTCCTTTTC AGATCTACTG TCCCCATATA 
    TATGTTCTGA TATGAGGAAT GGAGTGAGAT ATAGTCAGTT TCCTCCAGCT 
    GACTTCGATA GAAGTTGAAA TTTAGAACAC ACCGGATACT GATGTTCTTC 
    TTTGCGGGGG GTATGACCTA GGCTTGTCCG GTTCCAATTT TGTTCCATCT 
    CTTTGCCTGT AGCATATTTA TGGTGGTTTT TATGGAAATA CAGGCAAATA 
    GGTAAGACTG AGATGCGCAT GCTGAAAATC TTATTTGACT GAAGTGGTTC 
    AACCATTCAT CTTATTTGTT AGAATTTGAT TTTGTCTTCA TTATCATAGA 
    TGATGAAAAG TTGAACTTAC CG

    Gene models with high sequence identity

    1. AT2G18330.1 [+] show detail - AAA-type ATPase family protein
      E-value: 0; Score: 715.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan ATPase, AAA-type, conserved site 0
    HMMSmart ATPase, AAA+ type, core 3e-15
    Gene3D no description 7.9e-26
    HMMPfam Protein of unknown function DUF3523 2.1e-107
    HMMPfam ATPase, AAA-type, core 3.1e-26
    Coil coiled-coil 0
    Coil coiled-coil 0
    superfamily P-loop containing nucleoside triphosphate hyd 8e-44
    HMMPanther PUTATIVE ATP-ASE 6.2e-258

    See the detailed result >

    AT2G18330.1

    Model type
    Protein coding
    Short Description
    AAA-type ATPase family protein
    Computational Description
    AAA-type ATPase family protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960), Protein of unknown function DUF3523 (InterPro:IPR021911); BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT4G36580.1); Has 47815 Blast hits to 38452 proteins in 3171 species: Archae - 1435; Bacteria - 14558; Metazoa - 11715; Fungi - 4870; Plants - 3045; Viruses - 138; Other Eukaryotes - 12054 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR