K26303

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K26303

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K26303

Determination of introduced cDNA(s)

  • J013126G21 - Rice Full-length cDNAs - Original: J013126G21

    full reading [+] show sequence

    Nucleotide sequence: J013126G21 - full reading 
    TCGCCTCCGC CTCGCTCCAG TACCAGTACG ACTGCTCCCA CCTCCTCTCC 
    CTCCCGGCCT TCCCCTCCCA CCCCATCACC TCCCGCTTCC TCGCTTCCCT 
    CGCCCCGCCG CGACCCGGCG CCGCCGCCAC CACCAAACCC TCCTCCGCCA 
    ACGCCTACGC CGCCGCCTTT CCGGCGACCC TCCGCGCGCA CGCCACCGTC 
    TGCAACGCAA GCCCATCAGC GACGACGCAG CGGTCCGATT ACTCCACCGT 
    GCAAGCCGCC ATTGACGCGG CGCCGAACCA CACCGCGGGG CATTTCGTCA 
    TCAAGGTGGC TGCAGGTATA TACAAGGAGA ATGTGGTAAT TCCGTATGAG 
    AAGACCAACA TTTTGCTGGT GGGTGATGGG ATTGGTGCTA CCGTGATCAC 
    TGCCTCGCGG AGTGTGGGGA TTGATGGGAT TGGTACCTAT GAAACTGCAA 
    CTGTTGCCGT CATCGGTGAT GGTTTCCGGG CAAAGGATAT AACATTCGAG 
    AACGGCGCGG GTGCGGGAGC TCATCAGGCG GTGGCATTCC GGTCAGACAG 
    TGACCGGTCG GTGCTGGAGA ACGTCGAGTT CCGCGGCCAC CAGGACACAC 
    TGTATGCTCG CACGATGCGG CAGCTGTATC GCCGGTGCCG TATCACGGGG 
    ACGGTCGATT TCATATTCGG GAATTCAGCG GCGGTGTTTG AGGAATGCGT 
    GATCAAGACG GTGCCACGGG CAGAGGGAGC TCGAAAGAGC GCGCGCAATG 
    TGGTGGCGGC AAATGGGAGG ATTGATCCAG GGCAGACAAC GGGGTTTGTG 
    TTCTGGAATT GCACACTTGA TGGGAGCAAA GAGTTCTTAG CGTTGTTTCG 
    GGCAAAGCCG GAGTCTTATC GGCTGTATTT GGGGCGCCCA TGGAAGGAGT 
    ATGCAATTAC AGTGTATGCC GGATGTTATT TGGGGAAGGT TGTCAGGCCA 
    GTGGGATGGC TTCCTTGGCG TGGGGAATTC GCACTCAGGA CGCTATACTA 
    TGGGGAGTTT GACAGTCGAG GGCCTGGTGC AAATCACACG GCAAGGGTTG 
    AGTGGAGCAG CCAGGCACCA GAACAATTTG TAGGAGTCTA CTCAGTAGAG 
    AACTTTATTC AGGGGCATGA ATGGATTGCA TACTAACTAC AATGTGAAGT 
    GAAATTATTA TATCAGTGTT TCTTGGTGGC AGTTCTACAT CACAATTTTG 
    AAAATTATCT TGAGACTACA AGATGCTCCA AAGGATCTGA TGCCAACTGT 
    ATTGACACGG TACATAGGCC AACTGATGTG GTTTCTTTTG TGTTTAGTTG 
    TACCTTAGTT TTGTTTTAAT GTTTGGTTGC GCTTTTGGGC TAGTGTCTGG 
    TTACAGATTT TGTAATTGCG TTAATTCTTT TGTAGAATAC ATATCAAAAA 
    ATGGTTTGCT GCGGAATATT TTACAAGCTT ATTTATGTTT TGCTCCTGCA 
    ATATAATTAG TTTGTGGTTG CCTCTGC

    Gene models with high sequence identity

    1. AT5G09760.1 [+] show detail - Plant invertase/pectin methylesterase inhibitor superfamily
      E-value: 2e-102; Score: 370.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Pectinesterase, catalytic 1.99999999999999e-100
    PatternScan Pectinesterase, active site 0
    superfamily Pectin lyase fold/virulence factor 5.9e-87
    Gene3D Pectin lyase fold 1e-97

    See the detailed result >

    AT5G09760.1

    Model type
    Protein coding
    Short Description
    Plant invertase/pectin methylesterase inhibitor superfamily
    Computational Description
    Plant invertase/pectin methylesterase inhibitor superfamily; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: cell wall, chloroplast, plant-type cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectinesterase inhibitor (InterPro:IPR006501), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily (TAIR:AT5G64640.1); Has 2807 Blast hits to 2761 proteins in 473 species: Archae - 6; Bacteria - 874; Metazoa - 1; Fungi - 174; Plants - 1725; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR