K26307

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K26307

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • increased width (PATO:0000600)
    (Seed::Shape::wide)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K26307

Determination of introduced cDNA(s)

  • J013122G04 - Rice Full-length cDNAs - Original: J013122G04

    full reading [+] show sequence

    Nucleotide sequence: J013122G04 - full reading 
    ACATTAAGGT TCAAGGTATT ATTGGACCAT GCACATCTTT GGAAAAGAAA 
    GGAGCTCTAT GTGCCGACAC AGTTGTTGGT CAAGGAAATA CAACAGCATG 
    GAAAATGTGT GGTCTTGACA GGAATACTTC ATTAACAGTA TTTTTTGATG 
    TCTCACCGAG TGAGCGGTCA AGCCAACCAG GACATCAGAA TCCCGATCTG 
    TATATACAAT TTGTAACAAG TTACCAACAC CCAGAAGGTC AAATGAGGAT 
    TAGAGTTACT ACCATATGCA GAAAATGGGT GGATGGATCT ACCAACACAG 
    AGGAATTAGT CGAGGGTTTT GACCAGGAAA CTGCAGCTGT TGTGTTGGCG 
    AGATACATCT CGTTGAAAAT GGAAATGGAG GAAGAGTTCG ATGCAACACG 
    GTGGCTTGAT AGATCCCTCA TACGGCTTTG TTCAAGATTT GGGGATTATC 
    GGAAGGATGA TCCATCTTCA TTTAGCTTGC ATTCAAATTT CTCTTTGTTT 
    CCTCAGTTTA TGTTTAATCT ACGGCGTTCA CAATTTGTTC AGGTTTTCAA 
    TAACAGTCCA GATGAGACAG CTTATTTCCG GATGTTACTC AACCGTGAGA 
    GTATCACTAA CTCAGTTGCC ATGATTCAAC CATCATTAAT TTCATTCTCT 
    TTTGATTTGC CTCCATCTCC TGTATTCCTC GATGTGGCAT CAATAGCAGC 
    AGATCGTATA CTGCTACTTG ATGCATACTT CAGTGTTGTC ATCTTCCATG 
    GTATGACAAT TGCTCAGTGG AGAAACATGG GTTACCAGAA TCAACCTGAG 
    CATCAGCAAT TTGCACAATT GTTGCAAGCT CCTCACGAGG AGGCTCAAAT 
    AATAATTAAA GGACGATTTC CTGCTCCAAG ACTAGTTGTC TGTGACCAAC 
    ATGGCTCACA GGCAAGGTTC TTGTTGGCAA AGCTGAACCC ATCGGCTACA 
    TATAACTCAG CACATGATGT TCCTCCAGGT TCTGACATCA TATTCACGGA 
    TGATGTTAGT TTCCAGGTCT TCTGTGAGCA TCTTCAAAGG CTGGCCGTTC 
    AGTCCTAAGG ACATGTATGC AAAGTTGTAC ACCGTATCTG ATAGCTATAT 
    TTACTGAGTT TGGTAGGTCT GAGTTGTGGG AGATTTCTGC TTTCCCTTTT 
    TTTGACCTCA TGTGTTCTTA TTACATCGTG TCAGGTTTTC CGACATCAGA 
    CAATTTTTTC GGGAAATAAT CTTGAAAGCA TGTATAAGTT GTCCCCATAA 
    TATTATTTAT CCATCATATA TACTTCTTTA TATTGACCTC ACTGTCATCT 
    TAAGGTGTAT AGACAAGTAA GATTTTTGTG GT

    Gene models with high sequence identity

    1. AT3G23660.1 [+] show detail - Sec23/Sec24 protein transport family protein
      E-value: 1e-150; Score: 529.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily SSF81995 3.3e-38
    superfamily SSF82754 3e-56
    HMMPanther PTHR11141 0
    HMMPfam Sec23/Sec24, helical domain 1.1e-27
    superfamily Sec23/Sec24, helical domain 4.6e-48
    HMMPfam Sec23/Sec24 beta-sandwich 1.9e-24
    HMMPfam Gelsolin domain 4.9e-11

    See the detailed result >

    AT3G23660.1

    Model type
    Protein coding
    Short Description
    Sec23/Sec24 protein transport family protein
    Computational Description
    Sec23/Sec24 protein transport family protein; FUNCTIONS IN: transporter activity, zinc ion binding; INVOLVED IN: intracellular protein transport, transport, ER to Golgi vesicle-mediated transport; LOCATED IN: COPII vesicle coat; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sec23/Sec24, helical domain (InterPro:IPR006900), Sec23/Sec24 beta-sandwich (InterPro:IPR012990), Sec23/Sec24, trunk domain (InterPro:IPR006896), Zinc finger, Sec23/Sec24-type (InterPro:IPR006895), Gelsolin domain (InterPro:IPR007123); BEST Arabidopsis thaliana protein match is: Sec23/Sec24 protein transport family protein (TAIR:AT4G14160.2); Has 1418 Blast hits to 1403 proteins in 244 species: Archae - 0; Bacteria - 0; Metazoa - 517; Fungi - 392; Plants - 312; Viruses - 0; Other Eukaryotes - 197 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR