K26308

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K26308

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K26308

Determination of introduced cDNA(s)

  • J033145H23 - Rice Full-length cDNAs - Original: J033145H23

    full reading [+] show sequence

    Nucleotide sequence: J033145H23 - full reading
    GTCTCTCCAA TATTTTGTCG AACCGATTGA GGGAAAAAAA AAAGAGAAAA 
    AGAAAAGAAA AAAAAGAAGA AGAAGAGAGA ACTCGAACTC TCGCCTACCA
    TTTCGCCCCC CTCCGCAAGC AATCCACCAC TGCATCGGCG GCGAGGGCTC
    ACCGGCGGCG AGCCATGTGC GGCGGCGCCA TCATCCACCA CCTGAAGGGG
    CACCCGGAGG GGTCGCGCCG GGCGACGGAG GGGCTCCTGT GGCCCGAGAA
    GAAGAAGCCC AGGTGGGGCG GCGGCGGGAG GCGCCACTTC GGGGGGTTCG
    TGGAGGAGGA CGACGAGGAC TTCGAGGCCG ACTTCGAGGA GTTCGAGGTG
    GACTCCGGGG ACTCGGATTT GGAGCTCGGG GAGGAGGACG ACGATGACGT
    CGTCGAGATC AAGCCGGCCG CCTTCAAGAG GGCCCTCTCC AGAGATAACT
    TGAGCACCAT TACCACTGCC GGATTTGATG GTCCTGCTGC AAAGTCTGCC
    AAAAGAAAGA GAAAGAACCA ATTCAGGGGC ATCCGCCAGC GCCCTTGGGG
    TAAGTGGGCT GCTGAAATCA GAGATCCTCG CAAGGGTGTT CGTGTCTGGC
    TTGGCACTTT CAACAGTGCT GAAGAAGCTG CAAGAGCTTA TGATGCTGAA
    GCACGCAGGA TTCGTGGCAA GAAGGCCAAG GTGAATTTTC CAGAGGCTCC
    AACAACTGCT CAGAAGCGTC GTGCTGGCTC CACCACTGCT AAAGCACCCA
    AGTCAAGTGT GGAACAGAAG CCTACTGTCA AACCAGCATT CAACAATCTT
    GCCAATGCAA ATGCGTTTGT CTACCCATCT GCTAACTTCA CTTCAAACAA
    GCCGTTTGTT CAGCCTGATA ACATGCCATT TGTTCCTGCA ATGAACTCTG
    CTGCTCCTAT TGAGGACCCT ATCATCAACT CTGACCAGGG AAGCAACTCA
    TTTGGCTGCT CTGACTTTGG CTGGGAGAAT GATACCAAGA CACCAGATAT
    TACATCAATT GCTCCCATTT CAACCATAGC TGAAGTCGAT GAATCTGCAT
    TCATTAAGAG CAGTACCAAC CCAATGGTCC CTCCTGTTAT GGAGAACAGT
    GCTGTTGATC TGCCTGATTT AGAACCCTAC ATGAGGTTCC TTCTGGATGA
    TGGTGCTGGT GACTCAATTG ATAGCCTTCT CAACCTGGAT GGATCACAGG
    ATGTTGTCAG CAACATGGAC CTCTGGAGCT TTGATGACAT GCCCGTTAGC
    GATTTCTATT GAGGAATTCG AAGTCTTCTA GTCGGAGCAT GTACACAGGG
    AAAAAAAAGG AATAAATACT ATTGGAGATT GGGAGGCACC TGCATGGCAC
    CTTGGGGGTA GCATATCGTT ATGTTTAGCT TAGATGCAAA AGGCTGCATC
    CTGAAACTCT TTGGTGATTG GACCTGTTCC CTATCCGCTG TCTATGTATG
    GCAGCCATCT ATGAGACTCA AGAACTGCTT TTTTTTTTCC GTTCTAGTTT
    TCTGTCGTTG CTACCTGTAT ATGGCTATGA ACATCGTGAA TCCATGGCCA
    TTATGTTTTA ATCTATGTTG TTGACTGCTC TTTCTTTCGG TCTTTGCTGT
    GCTGCGCTAT GTTGGTGATA ACTAGCTACC ATATTGATTT TCTGTACATA
    ATTCATTTGT TGAATCCGAA ATTAAATAGT GCATTGACC

    Gene models with high sequence identity

    1. AT3G14230.3 [+] show detail - related to AP2 2
      E-value: 8e-33; Score: 139.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily DNA-binding, integrase-type 7.9e-23
    HMMPfam Pathogenesis-related transcriptional factor/ERF, DNA-binding 1.8e-15
    Gene3D Pathogenesis-related transcriptional factor/ERF, DNA-binding 7.9e-23
    ProfileScan Pathogenesis-related transcriptional factor/ERF, DNA-binding 23.459
    FPrintScan Pathogenesis-related transcriptional factor/ERF, DNA-binding 1.7e-10
    FPrintScan Pathogenesis-related transcriptional factor/ERF, DNA-binding 1.7e-10
    Coil coiled-coil 0
    HMMSmart Pathogenesis-related transcriptional factor/ERF, DNA-binding 9.9e-36

    See the detailed result >

    AT3G14230.3

    Model type
    Protein coding
    Short Description
    related to AP2 2
    Curator Summary
    encodes a member of the ERF (ethylene response factor) subfamily B-2 of ERF/AP2 transcription factor family (RAP2.2). The protein contains one AP2 domain. There are 5 members in this subfamily including RAP2.2 AND RAP2.12.
    Computational Description
    related to AP2 2 (RAP2.2); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: related to AP2 12 (TAIR:AT1G53910.2); Has 6242 Blast hits to 5847 proteins in 256 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 6195; Viruses - 4; Other Eukaryotes - 41 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR