K26308

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	decreased size (PATO:0000587) (Seed::Shape::small) decreased length (PATO:0000574) (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K26308

Determination of introduced cDNA(s)

J033145H23 - Rice Full-length cDNAs - Original: J033145H23

full reading [+] show sequence

GTCTCTCCAA TATTTTGTCG AACCGATTGA GGGAAAAAAA AAAGAGAAAA 
AGAAAAGAAA AAAAAGAAGA AGAAGAGAGA ACTCGAACTC TCGCCTACCA 
TTTCGCCCCC CTCCGCAAGC AATCCACCAC TGCATCGGCG GCGAGGGCTC 
ACCGGCGGCG AGCCATGTGC GGCGGCGCCA TCATCCACCA CCTGAAGGGG 
CACCCGGAGG GGTCGCGCCG GGCGACGGAG GGGCTCCTGT GGCCCGAGAA 
GAAGAAGCCC AGGTGGGGCG GCGGCGGGAG GCGCCACTTC GGGGGGTTCG 
TGGAGGAGGA CGACGAGGAC TTCGAGGCCG ACTTCGAGGA GTTCGAGGTG 
GACTCCGGGG ACTCGGATTT GGAGCTCGGG GAGGAGGACG ACGATGACGT 
CGTCGAGATC AAGCCGGCCG CCTTCAAGAG GGCCCTCTCC AGAGATAACT 
TGAGCACCAT TACCACTGCC GGATTTGATG GTCCTGCTGC AAAGTCTGCC 
AAAAGAAAGA GAAAGAACCA ATTCAGGGGC ATCCGCCAGC GCCCTTGGGG 
TAAGTGGGCT GCTGAAATCA GAGATCCTCG CAAGGGTGTT CGTGTCTGGC 
TTGGCACTTT CAACAGTGCT GAAGAAGCTG CAAGAGCTTA TGATGCTGAA 
GCACGCAGGA TTCGTGGCAA GAAGGCCAAG GTGAATTTTC CAGAGGCTCC 
AACAACTGCT CAGAAGCGTC GTGCTGGCTC CACCACTGCT AAAGCACCCA 
AGTCAAGTGT GGAACAGAAG CCTACTGTCA AACCAGCATT CAACAATCTT 
GCCAATGCAA ATGCGTTTGT CTACCCATCT GCTAACTTCA CTTCAAACAA 
GCCGTTTGTT CAGCCTGATA ACATGCCATT TGTTCCTGCA ATGAACTCTG 
CTGCTCCTAT TGAGGACCCT ATCATCAACT CTGACCAGGG AAGCAACTCA 
TTTGGCTGCT CTGACTTTGG CTGGGAGAAT GATACCAAGA CACCAGATAT 
TACATCAATT GCTCCCATTT CAACCATAGC TGAAGTCGAT GAATCTGCAT 
TCATTAAGAG CAGTACCAAC CCAATGGTCC CTCCTGTTAT GGAGAACAGT 
GCTGTTGATC TGCCTGATTT AGAACCCTAC ATGAGGTTCC TTCTGGATGA 
TGGTGCTGGT GACTCAATTG ATAGCCTTCT CAACCTGGAT GGATCACAGG 
ATGTTGTCAG CAACATGGAC CTCTGGAGCT TTGATGACAT GCCCGTTAGC 
GATTTCTATT GAGGAATTCG AAGTCTTCTA GTCGGAGCAT GTACACAGGG 
AAAAAAAAGG AATAAATACT ATTGGAGATT GGGAGGCACC TGCATGGCAC 
CTTGGGGGTA GCATATCGTT ATGTTTAGCT TAGATGCAAA AGGCTGCATC 
CTGAAACTCT TTGGTGATTG GACCTGTTCC CTATCCGCTG TCTATGTATG 
GCAGCCATCT ATGAGACTCA AGAACTGCTT TTTTTTTTCC GTTCTAGTTT 
TCTGTCGTTG CTACCTGTAT ATGGCTATGA ACATCGTGAA TCCATGGCCA 
TTATGTTTTA ATCTATGTTG TTGACTGCTC TTTCTTTCGG TCTTTGCTGT 
GCTGCGCTAT GTTGGTGATA ACTAGCTACC ATATTGATTT TCTGTACATA 
ATTCATTTGT TGAATCCGAA ATTAAATAGT GCATTGACC

Gene models with high sequence identity

AT3G14230.3 [+] show detail - related to AP2 2
E-value: 8e-33; Score: 139.00

InterPro Scan Digest

Program	Description	E-value
superfamily	DNA-binding, integrase-type	7.9e-23
HMMPfam	Pathogenesis-related transcriptional factor/ERF, DNA-binding	1.8e-15
Gene3D	Pathogenesis-related transcriptional factor/ERF, DNA-binding	7.9e-23
ProfileScan	Pathogenesis-related transcriptional factor/ERF, DNA-binding	23.459
FPrintScan	Pathogenesis-related transcriptional factor/ERF, DNA-binding	1.7e-10
FPrintScan	Pathogenesis-related transcriptional factor/ERF, DNA-binding	1.7e-10
Coil	coiled-coil	0
HMMSmart	Pathogenesis-related transcriptional factor/ERF, DNA-binding	9.9e-36

See the detailed result >

AT3G14230.3

Model type: Protein coding
Short Description: related to AP2 2
Curator Summary: encodes a member of the ERF (ethylene response factor) subfamily B-2 of ERF/AP2 transcription factor family (RAP2.2). The protein contains one AP2 domain. There are 5 members in this subfamily including RAP2.2 AND RAP2.12.
Computational Description: related to AP2 2 (RAP2.2); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: related to AP2 12 (TAIR:AT1G53910.2); Has 6242 Blast hits to 5847 proteins in 256 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 6195; Viruses - 4; Other Eukaryotes - 41 (source: NCBI BLink).
Link: InterPro Scan - TAIR