K26327

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K26327

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased width (PATO:0000600)
    (Seed::Shape::wide)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K26327

Determination of introduced cDNA(s)

  • J023098A04 - Rice Full-length cDNAs - Original: J023098A04

    full reading [+] show sequence

    Nucleotide sequence: J023098A04 - full reading 
    GTTGGAGGCG CCACGTTTAA AGGGCGGAGT CGCTGTAATT AGAGAAGAGG 
    ATTTAAAGAG AGAGAAGGCC ATTCTCTCTT GATTGCTTGG AGAGGAAGAA 
    GAACAAGAGC CGCCACCGCC GCCGTTAGGT TTTTATTTAT TTTTTTTCTC 
    GATCTGATCC GAGGAGGAGC GAAGCGAAGA AGGGCAAGAT GCATTCGACG 
    AATCTGCTGC TGGAGGAGCC CATCAGGATG GCATCCATCC TGGAGCCATC 
    CAAGCCCAGC TTCTTCCCGG CGATGACCAA GATCGTGGGG ACGCTGGGGC 
    CAAAGTCGCG CTCCGTCGAC ACCATCTCCT CCTGCCTCAA GGCCGGCATG 
    TCGGTGGCCC GATTTGATTT CTCGTGGGGA GACGCCGAGT ACCACCAGGA 
    AACCCTTGAG AACCTCAAGG TCGCCATCAA GTCCACCAAG AAGCTCTGCG 
    CGGTCATGCT TGACACGGTC GGCCCAGAGT TGCAGGTGGT GAACAAGAGC 
    GAAGCCTCCA TCTCCCTCGA GGAGAACGGC ACTGTTATTC TCACCCCTGA 
    CCAGGGGCAG GAGGCCTCCT CACAAGTGCT GCCAATTAAC TTCGCTGGGC 
    TTGCTAAGGC TGTGAAGCCA GGTGACACAA TATTTGTTGG GCAATACTTG 
    TTCACAGGCA GTGAGACTAC TTCAGTTTGG TTAGAGGTTT CTCAAATTAA 
    AGGAGATGAT GTGGTCTGTG TGATAAAAAA CACAGCAACT CTGGCTGGGT 
    CGCTCTTCAC ATTGCATTGC TCGCAGATTC ACATCGACTT ACCTACCCTA 
    TCTGATGAGG ACAAGGAGGT TATCAGAAAA TGGGGTGCCC CAAACAAGAT 
    TGACTTCCTC TCTCTTTCTT ATACAAGACA TGTAGAAGAT GTGCGACAGG 
    CACGTGAATT CCTCTCAAAG TTAGGTGACC TTAGCCAGAC CCAGATTTTT 
    GCAAAAATCG AGAATGTGGA GGGGTTGAAT AATTTTGATG AAATCCTCCA 
    AGAAGCTGAT GGTATCATCC TGTCAAGAGG AAACCTTGGA ATTGATCTTC 
    CACCTGAAAA GGTGTTTTTA TTTCAAAAGT CTGCTCTGCA CAAGTGCAAC 
    ATGGCTGGAA AGCCTGCTGT TGTTACTCGT GTTGTAGACA GTATGACTGA 
    CAACCTCAGG CCTACTCGTG CAGAGGCTAC GGATGTGGCA AATGCAGTGC 
    TTGACGGGAG TGATGCCATT CTCCTTGGTG CTGAGACTCT GCGTGGTTTA 
    TACCCAGTTG AGACTATTTC AATAGTGGGT AAAATTTGTG CTGAGGCTGA 
    GAAGGTCTTC AACCAAGATT TATACTTCAA GAGAACTGTG AAACATGTGG 
    GGGAGCCCAT GACCCACTTG GAGTCTATTG CTTCCTCTGC GGTGCGAGCT 
    GCTATTAAAG TGAAGGCGTC TGTCATAATT TGCTTCACAT CATCTGGACG 
    TGCTGCAAGG CTAATTGCCA AGTATAGGCC AACCATGCCT GTTCTATCTG 
    TTGTCATTCC TCGTCTAAAA ACAAATCAAC TGAGGTGGAG TTTCACTGGC 
    GCATTTGAAG CAAGACAATC GCTCATAGTT AGAGGCCTCT TTCCGATGCT 
    TGCTGATCCG AGGCATCCAG CTGAATCAAC CAACGCTACA AATGAATCCG 
    TTTTGAAGGT TGCTCTTGAC CACGGTAAAG TTTCTGGTGT GATAAAGTCG 
    CATGATCGCG TTGTTGTCTG CCAGAAGGTG GGAGATTCCT CGGTTGTGAA 
    GATCATTGAG CTGGACGATT AGACAAGCAG CTTGTGCTCG TCGTCGATGA 
    TACTATGGCA TGTTTTGCCA GATTTTGACT AGGCCAAAAA CGTTGCTTCT 
    TGGCTATGTA TAATCCTATA GCTTCAAATG AGCAGTTTTT CCTATGGTGT 
    ATTCATAGGA TTTGCCTTAC AGCTTGAAAC GATTATGATT TAGTTAAGGA 
    AATTAAATTT GCGCAGC

    Gene models with high sequence identity

    1. AT3G52990.1 [+] show detail - Pyruvate kinase family protein
      E-value: 0; Score: 918.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Pyruvate/Phosphoenolpyruvate kinase, catalytic core 2.4e-71
    superfamily Pyruvate kinase, C-terminal-like 1.3e-25
    superfamily Pyruvate kinase, beta-barrel-like 7.1e-09
    FPrintScan Pyruvate kinase, barrel 1.5e-44
    FPrintScan Pyruvate kinase, barrel 1.5e-44
    FPrintScan Pyruvate kinase, barrel 1.5e-44
    FPrintScan Pyruvate kinase, barrel 1.5e-44
    FPrintScan Pyruvate kinase, barrel 1.5e-44
    FPrintScan Pyruvate kinase, barrel 1.5e-44
    Gene3D Pyruvate/Phosphoenolpyruvate kinase, catalytic core 5.9e-67
    Gene3D Pyruvate kinase, alpha/beta 7.1e-18
    HMMPfam Pyruvate kinase, barrel 8.2e-93
    HMMPfam Pyruvate kinase, alpha/beta 9.2e-22
    HMMTigr Pyruvate kinase 2.7e-102
    HMMPanther Pyruvate kinase 7.8e-197

    See the detailed result >

    AT3G52990.1

    Model type
    Protein coding
    Short Description
    Pyruvate kinase family protein
    Computational Description
    Pyruvate kinase family protein; FUNCTIONS IN: pyruvate kinase activity, potassium ion binding, magnesium ion binding, catalytic activity; INVOLVED IN: response to cadmium ion, glycolysis; LOCATED IN: membrane; EXPRESSED IN: guard cell, cultured cell, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Pyruvate/Phosphoenolpyruvate kinase, catalytic core (InterPro:IPR015813), Pyruvate kinase, alpha/beta (InterPro:IPR015794), Pyruvate kinase, beta-barrel-like (InterPro:IPR011037), Pyruvate kinase (InterPro:IPR001697), Pyruvate kinase, C-terminal-like (InterPro:IPR015795), Pyruvate kinase, barrel (InterPro:IPR015793); BEST Arabidopsis thaliana protein match is: Pyruvate kinase family protein (TAIR:AT2G36580.1); Has 9836 Blast hits to 9793 proteins in 2683 species: Archae - 167; Bacteria - 5933; Metazoa - 534; Fungi - 219; Plants - 549; Viruses - 0; Other Eukaryotes - 2434 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR