K26327

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K26327

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • increased width (PATO:0000600)
    (Seed::Shape::wide)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K26327

Determination of introduced cDNA(s)

  • J023098A04 - Rice Full-length cDNAs - Original: J023098A04

    full reading [+] show sequence

    Nucleotide sequence: J023098A04 - full reading
    GTTGGAGGCG CCACGTTTAA AGGGCGGAGT CGCTGTAATT AGAGAAGAGG 
    ATTTAAAGAG AGAGAAGGCC ATTCTCTCTT GATTGCTTGG AGAGGAAGAA
    GAACAAGAGC CGCCACCGCC GCCGTTAGGT TTTTATTTAT TTTTTTTCTC
    GATCTGATCC GAGGAGGAGC GAAGCGAAGA AGGGCAAGAT GCATTCGACG
    AATCTGCTGC TGGAGGAGCC CATCAGGATG GCATCCATCC TGGAGCCATC
    CAAGCCCAGC TTCTTCCCGG CGATGACCAA GATCGTGGGG ACGCTGGGGC
    CAAAGTCGCG CTCCGTCGAC ACCATCTCCT CCTGCCTCAA GGCCGGCATG
    TCGGTGGCCC GATTTGATTT CTCGTGGGGA GACGCCGAGT ACCACCAGGA
    AACCCTTGAG AACCTCAAGG TCGCCATCAA GTCCACCAAG AAGCTCTGCG
    CGGTCATGCT TGACACGGTC GGCCCAGAGT TGCAGGTGGT GAACAAGAGC
    GAAGCCTCCA TCTCCCTCGA GGAGAACGGC ACTGTTATTC TCACCCCTGA
    CCAGGGGCAG GAGGCCTCCT CACAAGTGCT GCCAATTAAC TTCGCTGGGC
    TTGCTAAGGC TGTGAAGCCA GGTGACACAA TATTTGTTGG GCAATACTTG
    TTCACAGGCA GTGAGACTAC TTCAGTTTGG TTAGAGGTTT CTCAAATTAA
    AGGAGATGAT GTGGTCTGTG TGATAAAAAA CACAGCAACT CTGGCTGGGT
    CGCTCTTCAC ATTGCATTGC TCGCAGATTC ACATCGACTT ACCTACCCTA
    TCTGATGAGG ACAAGGAGGT TATCAGAAAA TGGGGTGCCC CAAACAAGAT
    TGACTTCCTC TCTCTTTCTT ATACAAGACA TGTAGAAGAT GTGCGACAGG
    CACGTGAATT CCTCTCAAAG TTAGGTGACC TTAGCCAGAC CCAGATTTTT
    GCAAAAATCG AGAATGTGGA GGGGTTGAAT AATTTTGATG AAATCCTCCA
    AGAAGCTGAT GGTATCATCC TGTCAAGAGG AAACCTTGGA ATTGATCTTC
    CACCTGAAAA GGTGTTTTTA TTTCAAAAGT CTGCTCTGCA CAAGTGCAAC
    ATGGCTGGAA AGCCTGCTGT TGTTACTCGT GTTGTAGACA GTATGACTGA
    CAACCTCAGG CCTACTCGTG CAGAGGCTAC GGATGTGGCA AATGCAGTGC
    TTGACGGGAG TGATGCCATT CTCCTTGGTG CTGAGACTCT GCGTGGTTTA
    TACCCAGTTG AGACTATTTC AATAGTGGGT AAAATTTGTG CTGAGGCTGA
    GAAGGTCTTC AACCAAGATT TATACTTCAA GAGAACTGTG AAACATGTGG
    GGGAGCCCAT GACCCACTTG GAGTCTATTG CTTCCTCTGC GGTGCGAGCT
    GCTATTAAAG TGAAGGCGTC TGTCATAATT TGCTTCACAT CATCTGGACG
    TGCTGCAAGG CTAATTGCCA AGTATAGGCC AACCATGCCT GTTCTATCTG
    TTGTCATTCC TCGTCTAAAA ACAAATCAAC TGAGGTGGAG TTTCACTGGC
    GCATTTGAAG CAAGACAATC GCTCATAGTT AGAGGCCTCT TTCCGATGCT
    TGCTGATCCG AGGCATCCAG CTGAATCAAC CAACGCTACA AATGAATCCG
    TTTTGAAGGT TGCTCTTGAC CACGGTAAAG TTTCTGGTGT GATAAAGTCG
    CATGATCGCG TTGTTGTCTG CCAGAAGGTG GGAGATTCCT CGGTTGTGAA
    GATCATTGAG CTGGACGATT AGACAAGCAG CTTGTGCTCG TCGTCGATGA
    TACTATGGCA TGTTTTGCCA GATTTTGACT AGGCCAAAAA CGTTGCTTCT
    TGGCTATGTA TAATCCTATA GCTTCAAATG AGCAGTTTTT CCTATGGTGT
    ATTCATAGGA TTTGCCTTAC AGCTTGAAAC GATTATGATT TAGTTAAGGA
    AATTAAATTT GCGCAGC

    Gene models with high sequence identity

    1. AT3G52990.1 [+] show detail - Pyruvate kinase family protein
      E-value: 0; Score: 918.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Pyruvate/Phosphoenolpyruvate kinase, catalytic core 2.4e-71
    superfamily Pyruvate kinase, C-terminal-like 1.3e-25
    superfamily Pyruvate kinase, beta-barrel-like 0.0000000071
    FPrintScan Pyruvate kinase, barrel 1.5e-44
    FPrintScan Pyruvate kinase, barrel 1.5e-44
    FPrintScan Pyruvate kinase, barrel 1.5e-44
    FPrintScan Pyruvate kinase, barrel 1.5e-44
    FPrintScan Pyruvate kinase, barrel 1.5e-44
    FPrintScan Pyruvate kinase, barrel 1.5e-44
    Gene3D Pyruvate/Phosphoenolpyruvate kinase, catalytic core 5.9e-67
    Gene3D Pyruvate kinase, alpha/beta 7.1e-18
    HMMPfam Pyruvate kinase, barrel 8.2e-93
    HMMPfam Pyruvate kinase, alpha/beta 9.2e-22
    HMMTigr Pyruvate kinase 2.7e-102
    HMMPanther Pyruvate kinase 7.8e-197

    See the detailed result >

    AT3G52990.1

    Model type
    Protein coding
    Short Description
    Pyruvate kinase family protein
    Computational Description
    Pyruvate kinase family protein; FUNCTIONS IN: pyruvate kinase activity, potassium ion binding, magnesium ion binding, catalytic activity; INVOLVED IN: response to cadmium ion, glycolysis; LOCATED IN: membrane; EXPRESSED IN: guard cell, cultured cell, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Pyruvate/Phosphoenolpyruvate kinase, catalytic core (InterPro:IPR015813), Pyruvate kinase, alpha/beta (InterPro:IPR015794), Pyruvate kinase, beta-barrel-like (InterPro:IPR011037), Pyruvate kinase (InterPro:IPR001697), Pyruvate kinase, C-terminal-like (InterPro:IPR015795), Pyruvate kinase, barrel (InterPro:IPR015793); BEST Arabidopsis thaliana protein match is: Pyruvate kinase family protein (TAIR:AT2G36580.1); Has 9836 Blast hits to 9793 proteins in 2683 species: Archae - 167; Bacteria - 5933; Metazoa - 534; Fungi - 219; Plants - 549; Viruses - 0; Other Eukaryotes - 2434 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR