K26329

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K26329

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • dark green (PATO:0001249)
    (Cauline leaf::Color::dark)
rosette leaf (PO:0000014)
  • increased size (PATO:0000586)
    (Rosette leaf::Shape::large)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K26329

Determination of introduced cDNA(s)

  • J013049P20 - Rice Full-length cDNAs - Original: J013049P20

    full reading [+] show sequence

    Nucleotide sequence: J013049P20 - full reading 
    GCTTTAATTC ATCCTCTCTT CTCCTCTTCT CCTTCATCAC TAGGCAGTAG 
    CCACAGTAGC CAGTAGCTAG CTAGCTTGTC AAGCTAGGAG CTAGCAGCTG 
    TGTGTCGTCG ATGGCATCCA CCGCCGCCTT CCTGTCCACG CTCGCCGGCT 
    CGACCAGCCT GGGCGGCGCC ACGCCGGCCA GCGGCGGCGG GAGCGGGAGG 
    AGCAAGACGG CGAGGTTCTT GAGGAGGCGG CGGCGCGGCG GCGCGGTGAG 
    GGCGGCGGTG TCCGGCACGG AGCAGGCGCC GGAGACGACG AAGAAGAAGG 
    GCGGCGGCGG CGGCGGCGGG GACGAGCGGG TGGTGCAGGT GCACAGCGCG 
    GAGGAGCTCG ACGGCGCGCT GCGGGCGGCG AAGGAGCGGC TGGTGGTGGT 
    GGAGTTCGCG GCGAGCCACA GCGTGAACAG CAGCCGCATC TACCCGTGCA 
    TGGTGGAGCT GAGCCGCACC TGCGGCGACG TCGACTTCCT CCTCGTCATG 
    GGCGACGAGT CGGACGCCAC CCGGGAGCTG TGCCGCCGGG AGGGGATCAC 
    CGCCGTGCCC CACTTCACCT TCTACAAGGG CGCCGAGAAG GTCCACGAGG 
    AGGAGGGGAT CGGCCCCGAC CAGCTCGCCG GCGACGTCCT CTACTACGGC 
    GACCACCACT CCGCCGTCGT CCAGCTCCAC TCCCGCGCCG ACGTCGAGTC 
    CCTCATCTCC GACCACCGCG GCGAGGGCGG CAAGCTGGTG GTGCTCGACG 
    TGGGGCTCAA GCGATGCGGG CCCTGCGTGA AGGTGTACCC CACCGTCGTG 
    AAGCTGTCGC GCACCATGGC CGACACCACC GTCTTCGCCC GCATGAACGG 
    CGACGAGAAC GACAGCTGCA TGGAGTTCCT CCGCGACATG GACGTCGTCG 
    AGGTGCCCAC CTTCCTCTTC ATCAGGGACG GCGACATCGT CGGCCGCTAC 
    GTCGGCTCCG GCAGGGGGGA GCTCATCGGC GAGATCCTCA GATACAGCGG 
    CGTCAAGGTC ACCTAGACAT ATACAGATTC ATCACTACGC AGCTCAGCTG 
    CATGCAGCAA CCGTAATTAA ATTAATTACT GTACTACTCT CTTGATCATG 
    ATTGTAATTT TACACCACCA CACTAGCTTG AGAAGATCAA GCTTGTTTTA 
    TACTGGGGAC GATTTGATC

    Gene models with high sequence identity

    1. AT1G76080.1 [+] show detail - chloroplastic drought-induced stress protein of 32 kD
      E-value: 2e-99; Score: 359.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Thioredoxin domain 0.000011
    HMMPfam Thioredoxin domain 0.00000000025
    superfamily Thioredoxin-like fold 1.5e-19
    superfamily Thioredoxin-like fold 0.0000000000000018
    Gene3D Thioredoxin fold 0.0000000053
    Gene3D Thioredoxin fold 0.0000000000000015
    HMMPanther THIOREDOXIN H-TYPE-RELATED 0.0000000000007
    HMMPanther Thioredoxin, core 0.0000000000007

    See the detailed result >

    AT1G76080.1

    Model type
    Protein coding
    Short Description
    chloroplastic drought-induced stress protein of 32 kD
    Curator Summary
    Encodes a thioredoxin localized in chloroplast stroma. Known as CDSP32 (CHLOROPLASTIC DROUGHT-INDUCED STRESS PROTEIN OF 32 KD).
    Computational Description
    chloroplastic drought-induced stress protein of 32 kD (CDSP32); INVOLVED IN: cell redox homeostasis; LOCATED IN: chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin domain (InterPro:IPR013766), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: Thioredoxin superfamily protein (TAIR:AT1G19730.1); Has 3263 Blast hits to 3026 proteins in 903 species: Archae - 63; Bacteria - 1344; Metazoa - 643; Fungi - 77; Plants - 661; Viruses - 3; Other Eukaryotes - 472 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR