K26406

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K26406

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K26406

Determination of introduced cDNA(s)

J033126P14 - Rice Full-length cDNAs - Original: J033126P14

full reading [+] show sequence

GGTTGGAAGA AAATGACAAG CTTGTGCTTA CACCCTTTGA GAAGAACATT 
GACATCTGGA GACAGCTTTG GAGAGTCCTT GAACGTAGTG ATCTGCTGGT 
GATGGTAGTC GATGCTCGAG ATCCCTTATT CTACCGCTGT CCTGATCTCG 
AGGTATATGC AAAAGAAATT GATGAACACA AGAGGACAAT GATTCTTGTC 
AACAAGGCTG ATCTGTTACC AATGAATATC AGGAAAAAAT GGGCAGACTA 
TTTTAAGGCA CATGATATTC TCTATGTTTT CTGGTCCGCT AAAGCTGCTA 
CTGCCACATT AGAAGGCAAA ATATTAAGTG GATACTCTGA ACAAGATTCT 
GCTTCACTTG ATTTGGACAC CAAGATATAT GGCAGGGATG AACTCTTAAA 
GAAATTGCAA ACTGAAGCAG AATTCATTGT AGCACAAAGG AGGGCCGCAG 
CCATCAAAGA GGACAGCAGA GCCACTTCCT CTGATTCTGT TTCATCAGTG 
GCTAAGCATG TTGTTGTTGG ATTTGTTGGT TATCCAAATG TTGGAAAGAG 
TTCAACAATC AATGCTTTAG TTGGTGAGAA GAAGACTGGT GTTACTCACA 
CACCTGGCAA AACAAAGCAT TTCCAGACGC TGATAATCTC AGAGGAGCTC 
ACTCTATGTG ATTGTCCTGG TCTGGTCTTC CCTTCCTTCT CAAGCTCAAG 
GCATGAGATG GTGTCATGTG GTGTCTTGCC AATCGATAGG ATGACTAAGC 
ACCGGGAAGC TATTCAGGTG GTGGCAGATC GTGTCCCAAG AAGTGTCCTT 
GAACAGATTT ACAAGATAAC TCTGCCAAAG CCAAAGCCAT ATGAATCGCA 
GTCGAGACCA CCAACTGCTG CTGAGCTGTT GCGAGCCTAC TGTGCATCCA 
GGGGGCATGT TAGCCATGCT GGACTTCCTG ACGAGACTAG GGCTGCTCGA 
CAGATACTGA AAGATTATAT CGATGGTAAA ATTCCACACT TCGAACTTCC 
TCCTGGCATG GTAGATACTG AAAATGAACA CGAAGAAACC TCCGGATTAG 
AAGGTCCAAC TACCTCAGCA TACAATGAAT CAGGTGGTTC CGATTCCGAT 
GAACGGGATG ATACAGTTGA TCCAGCACAA CCAGATATGA GGCATGTCCT 
TAGCGACCTC GAATCGTTTG ACCTGGCCAC TGAAGGGTCT AAACCTGCTG 
GGAAGAAGAA GAAAGAGGCA TCCCACAAGC AGCACAAGAA GCCCCAGAGG 
AAGAAGGACC GGTCATGGAG GGTCGGCAAC GATGGCGGCG ATGGAACTGC 
GGTCTTAAGG GTGTACCAGA AACCAGCTGT TAACCTCTCT GCCGTCAGTG 
CAAGCGACAA GACCTAGTAC CCTGATGGCA TATTGTGTTT TCAACTACAC 
TTGGCACACA TGGGCAATAA GGTCTTTGCT CCCTTGAGTT TTCTGGAGAC 
CCTGACCTTT GCATATGCAA AATCAAGAAA TCTGGTTTAC GCCTGCCGTG 
TTGAGTGGTA GGGGAAATTT TGCCGCCTGT GAGCAAAATT GCCGAGGCTT 
GCTTGCTCTG GTGGATGCGA GATCGGAGAC GAAAGCTATA TAGAAGAAGA 
AAATTTTCTG TTTTATTTCA GCTTTTGTTC CCCTGGCATT ATATACAGCC 
AGTGTGAATT GTGTGTGATA TGTGTACTGT TTGTTCCTCC ATGAATGATC 
AAGAAATTAA CATAGAAATT GTAATAACTT TTCACCAGTT TTGTTCGTCT 
CATTTGGTTC AAAATGTTGC ACACAAACAT TACTTGT

Gene models with high sequence identity

AT1G08410.1 [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
E-value: 3e-142; Score: 502.00

InterPro Scan Digest

Program	Description	E-value
HMMPanther	GTP-BINDING PROTEIN-RELATED	4.7e-129
HMMPanther	GTP-BINDING PROTEIN-RELATED	4.7e-129
HMMPanther	gb def: Hypothetical protein Y51H4A.20	0.00017
HMMPanther	STAT transcription factor, core	0.00017
Gene3D	no description	7e-35
superfamily	P-loop containing nucleoside triphosphate hyd	5.6e-37
HMMPfam	GTP-binding protein, HSR1-related	2e-10
FPrintScan	GTP1/OBG	3.2e-06
FPrintScan	GTP1/OBG	3.2e-06

See the detailed result >

AT1G08410.1

Model type: Protein coding
Short Description: P-loop containing nucleoside triphosphate hydrolases superfamily protein
Computational Description: P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: GTP binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GTP1/OBG (InterPro:IPR006073), GTP-binding protein, HSR1-related (InterPro:IPR002917); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT2G27200.1); Has 7267 Blast hits to 7158 proteins in 1932 species: Archae - 109; Bacteria - 4700; Metazoa - 622; Fungi - 502; Plants - 285; Viruses - 0; Other Eukaryotes - 1049 (source: NCBI BLink).
Link: InterPro Scan - TAIR