K26409

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K26409

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K26409

Determination of introduced cDNA(s)

J013073N05 - Rice Full-length cDNAs - Original: J013073N05

full reading [+] show sequence

GTTTCCCGAT ACCGCCGCCC CTCTCACCAA ATTCGGTCTC CTCGTTGCTC 
CTCCTCACAA ATTAGTTGCG GGAACGGATT CCCCTCGATC TCCTCCAAGA 
AACCCCTTGA ATGCCGAATC AAATCGTGTG GAATCAACGC GGTTTTGAGT 
TATTATTTTA CGGCGAACCT TAACCAATCC ACCGCCAAAT CCTCTCTGGT 
CCGAGCCGAT TTCCTCAACC TTTGCCTATA AATAGCAGCC CCTGGACCTC 
CTCTTCCGTT TCCCTCTTCT TCCCGAGCTT TTCCCTAACC CTAGCCGTCT 
CCCCGCAGTC GCCTTCTCTC TCCAACTCCG GCCGCCGCTC CAGCCGGTAG 
TAGCCGTCGC CTCCGCCATC TCCGGTCAGT GCCGCCACCT CCCTCCGCTC 
CGCAAGGTTG ATCTCCACCC CGGCCACCGG TTTCCCTCCG CCAAATCCCG 
CCGGAAGGTT GCCGTCACCG TGAACCAGTG GGTTGTTGCC ACGGTTTGGT 
CTCCAGCCGC GCCGTTCGTC GTCGTCCATC GTCGCCTTGG GTCGCCGCCG 
CCTCCATTGG ATTCACAGAG ACGAGCTCTA CCCCGTCCAC CCCTCCGTTG 
CCACCGCTCG TCGCCGGAAA GCTGTCGCTG CCGTTGACCA GTACCTCGCC 
GTCGTCCCGA TCTCGTCGCC GGCCATCTCC TTTGCCGCTC ATCGCTGCGT 
AAGTGTTGCG TCGTCGTCAT CTCCGTGTGT TGCCGCCAGG TCGTTGTCGC 
CGTCTCTCCC TCTCCGATCG CTTTGGTTTG CTTGTCGTTT CCGTCGTTGC 
GAAGGTTCGT GAGTGCGTTG GAAGTGATTC AGAAGATTAA GTGAAGACCG 
ATTATTGCAA GACGCGCGGC GTCGTTGCGT TGTAGGATCG AGGAGGAGTA 
GCGGGGATGG GGCGGCCACC AATGCCAAGC ACGGGGGGCC CGGGTTTCCG 
GTTCACGCAG GAGGAGGTGG CCGAGATGGA GTCGCTCCTG CGGCATCTCA 
ACGACGGCAT CCCGGACGGC TCCTTGATCC AGTCCCTCGC CGACAGGTTC 
ACCGCCTCCG CCGCGCGCGC CGGCAAGGTC GGCGTCCGGT CCAAGCAGGT 
AATAGCCCGT GTGTCTCCTT TCCGGTGGGG AATTCGATCG CTTATGTCCT 
TAATTCTGAC ACGTTGATCC GGGCCGGGGT TGGTGTTGCG CGGGAGGTGT 
GGTACTGGTT CCAGAACCGG AAGTACTCGC AGCGCTCTAG GAACTCGACC 
AAGATGCTAC CGGCGGCGTC TGGCGACCAC AAGTCGGCCT TCGCTCGCTC 
CTCAGTTCAA AAATCAGTAA AGTATTCTTT GGAGGGTGGC CAGCTCGAGT 
TTGAGGCAAA GTCCGTTAGA GATGGTGCAT GGTATGATGT TGCTGCCTTC 
CTTTCCCATA GATTGTCCCA GTCTGGTGAA CTGGAAGTAT GGGTTCGATT 
TTCTGGATTT GGAGCTAGGG ACGACGAATG GATTGATGTC CGTACATGTG 
TGCGGCAACG TTCTCATCCA TGTGTGTCAA CCGAATGTGC CGCTGTTCTT 
CCTGGGGACC AAATTCTTTG CTTCCAGGAA GGCAAACATC AGGCTCTGTA 
TTTTGATGCT CATGTCCTTG ATGCTCAAAA GCGTAGGCAT GATGCAAGAG 
GTTGTCGTTG CAGATTTCTT GTTTGCTATG ATCATGATGA CTCTGAGGAA 
ATTGTTCCAC TGAGGAAGAT GTGTCGTCGG CCAGAAACTG ACTACAGACT 
TGAGATTCTA CATGCTGCTG GAGCAGCAAA TGCTGCTAAA GAGGCTGTGG 
TTGATTCGGT GATTGCTTAG TCACTTCGAT CGAAAGGGTA ATATAGTTGT 
CAGGAATTTC CACTCCAAAC ATAGTGGTTG CTTAATTAGG ACCCAATGTG 
ATTGTTGTAT CATTGACTTG ATTTCTATTG CACAAATTAG GTATGGCACA 
CAAATTTTAG TTTACATATT ATGCCAAAAA GTGTTGAAGC GGCTATGGAT 
CGGGTGCCCG ATCCGGAGCC AAAAAATTGG GGCCCATACC AGCCATCTAG 
CGCGCGCAAC TTGCCTCGAC C

Gene models with high sequence identity

AT3G18380.1 [+] show detail - sequence-specific DNA binding transcription factors;sequence-specific DNA binding
E-value: 3e-59; Score: 227.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Protein of unknown function DUF834	0.000031
HMMPfam	Protein of unknown function DUF834	0.00000034

See the detailed result >

AT3G18380.1

Model type: Protein coding
Short Description: sequence-specific DNA binding transcription factors;sequence-specific DNA binding
Computational Description: sequence-specific DNA binding transcription factors;sequence-specific DNA binding; FUNCTIONS IN: sequence-specific DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15215.2); Has 91 Blast hits to 88 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 91; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link: InterPro Scan - TAIR