K26422

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K26422

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K26422

Determination of introduced cDNA(s)

  • J023042B11 - Rice Full-length cDNAs - Original: J023042B11

    full reading [+] show sequence

    Nucleotide sequence: J023042B11 - full reading 
    GATTGCAAGC CTTACACGTG ACCCTGCGCA TGCTGCGTGT CCCCGAGCAG 
    CTGTCGCACA GAAGCAGTTG CAACCTGCGA GCGGAAACCC ACCTCCATCC 
    CGTCGCCGGC CTGCCGCCGC CGCCGCCGCC GCTTGCCCTC CTCCGCCTTA 
    CTCGGCCTCC GGCGCCTCCT GACCCCCCGG CCATGGGTTG CTCTTCGTCT 
    CTGCCAGCTA ATAATGCTGG AGGGGTAGGT ACTATCAGCA ACGAGAATTC 
    TGGTACTGAT CTGAAGAACT TGCGAGTGAA GTTGGTATTG CTTGGAGATT 
    CAGGTGTTGG GAAAAGTTGC ATTGTTCTTC GCTTTGTCCG TGGTCAGTTT 
    GACCCCACTT CAAAGGTGAC TGTTGGTGCA TCATTTTTGT CACAAACATT 
    GGCGTTGGAG GATTCCACAA CAGTAAAGTT TGAAATATGG GATACTGCTG 
    GTCAGGAGAG GTATGCTGCA TTGGCACCTC TTTACTACCG GGGAGCTGGT 
    GCCGCAATTG TTGTGTATGA CATAACAAGT TCAGAATCAT TTAACAAGGC 
    ACAATACTGG GTGAAGGAAC TTCAGAAACA CGGTAGTCCA GATATGATCA 
    TGGCTTTGGT TGGAAATAAG GCTGATCTAC ATGACAATCG TAGTGTATCC 
    TCTCAGGATG CACAAGAGTA TGCAGAGAGG AACACTATGT TTTTCATCGA 
    GACATCAGCG AAAACGGCTG ATAACATAAA CCAACTATTC GAGGAAATTG 
    CGAAGAGGTT GCCCAGGCCA ACACCATCCT GAATTCCTGA TTGGTAACTG 
    ACCCAGGAAA CAGGCTGGCA ACTGTGTATT GTACAACAGC AGTAAAAGCT 
    CTGTATGCAC ATTGTTTGGA AATGCAACAA CTGTCATGTA AAGCAACTAC 
    TTTGCTCCTT GCTGCTTCTG TTTCCAGCTT GGTCAAGTGA GCTCAGTGTT 
    TTGCTCAGCA CAAGCTGATA GGCTATACGC ATGGCCACAT GGTCATTAGC 
    AGTTGCATTA TGCTGCAGGA ATTTAACCGT TTCCTGTGAA AATCTTGTGA 
    AATTCCTGCG TTCAAAACAG AGCCTTTATT TCCAGTGCCA AATTGGTTCT 
    TTTACATCTG

    Gene models with high sequence identity

    1. AT3G54840.1 [+] show detail - Ras-related small GTP-binding family protein
      E-value: 2e-88; Score: 323.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily P-loop containing nucleoside triphosphate hyd 3.9e-55
    HMMSmart Ras small GTPase, Rab type 3.1e-78
    HMMSmart Ras small GTPase, Ras type 1.8e-26
    HMMSmart Small GTPase, Rho type 0.0000000000068
    HMMTigr Small GTP-binding protein 5.1e-27
    HMMPfam Ras 6e-58
    FPrintScan Ras GTPase 3.8e-37
    FPrintScan Ras GTPase 3.8e-37
    FPrintScan Ras GTPase 3.8e-37
    FPrintScan Ras GTPase 3.8e-37
    FPrintScan Ras GTPase 3.8e-37
    Gene3D no description 1.4e-55
    ProfileScan Small GTPase 32.812
    HMMPanther Rab5-related 3.6e-93
    HMMPanther RAS-RELATED GTPASE 3.6e-93

    See the detailed result >

    AT3G54840.1

    Model type
    Protein coding
    Short Description
    Ras-related small GTP-binding family protein
    Curator Summary
    Encodes a novel Rab-like GTP-ase that is localized to the peripheral membrane of the endosome.
    Computational Description
    ARA6; FUNCTIONS IN: GTP binding, GTPase activity; INVOLVED IN: early endosome to late endosome transport, N-terminal protein myristoylation; LOCATED IN: endosome, external side of endosome membrane, early endosome; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab5-related (InterPro:IPR015599); BEST Arabidopsis thaliana protein match is: Ras-related small GTP-binding family protein (TAIR:AT4G19640.1); Has 26142 Blast hits to 26098 proteins in 715 species: Archae - 24; Bacteria - 131; Metazoa - 13692; Fungi - 3685; Plants - 2883; Viruses - 20; Other Eukaryotes - 5707 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR