K26434

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K26434

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K26434

Determination of introduced cDNA(s)

  • J023149L23 - Rice Full-length cDNAs - Original: J023149L23

    full reading [+] show sequence

    Nucleotide sequence: J023149L23 - full reading
    GATCCTCCCC ACCTCCCTCC TCGCCGGCCG GAGTTCTCGT CTCCGGCGAC 
    CGCCGCCGCC GCCGCCCTCA CCGTCCGGTG GAGCTCCGGT GATCGACGCC
    GCGATGTCGA GGTCTGGGGC CATGGATCTT GCATCTGGAC TCGGGGGGAA
    GATCACCAAG GATGAGGTCA AGTCGGCTGT CGATGAGTAT GAGAAATACC
    ATGGATACTA TGGAGGAAAA GAAGAAGCAA GAAAGTCCAA CTACACAGAC
    ATGGTTAATA AATACTATGA TCTTGCCACC AGCTTCTATG AGTATGGTTG
    GGGTGAATCC TTCCACTTTG CTCACAGATG GAATGGAGAA TCCCTACGTG
    AAAGCATTAA GCGACATGAG CACTTTCTTG CCCTTCAGCT TGGAGTGAAA
    CCAGGAATGA AGGTTTTGGA CGTCGGTTGT GGAATAGGCG GACCACTAAG
    AGAAATTGCC AAATTTAGCT TGGCTTCAGT CACTGGATTG AACAACAATG
    AGTACCAGAT AACTAGGGGA AAGGAGCTTA ATCGGGTAGC AGGAGTTAGT
    GGAACTTGCG ACTTTGTGAA GGCAGACTTC ATGAAGATGC CGTTTTCTGA
    TAACACTTTT GATGCTGTCT ATGCCCATTG AGGCAACATG CCACGCACCT
    GATCCGGTTG GCTGCTATAA GGAGATCTAT CGTGTATTGA AGCCTGGCCA
    GTGTTTTGCT GTGTATGAGT GGTGTATTAC TGATCACTAT GAACCGAACA
    ATGCAACACA CAAGAGGATC AAGGATGAAA TCGAGCTTGG CAATGGCCTG
    CCAGATATCC GAAGCACTCA ACAATGTCTT CAAGCTGCAA AAGATGCTGG
    GTTTGAGGTT ATTTGGGATA AAGACCTTGC TGAAGATTCC CCGGTTCCTT
    GGTACCTGCC CTTGGATCCA AGCCGGTTTT CCTTGAGTAG CTTCCGTCTG
    ACTACTGTGG GGCGTGCAAT TACTCGCACA ATGGTGAAGG CATTGGAATA
    CGTCGGCCTT GCCCCACAAG GAAGTGAAAG GGTATCTAAC TTTTTAGAGA
    AGGCAGCTGA AGGTCTCGTC GAAGGTGGCA AGAAGGAAAT CTTCACGCCG
    ATGTACTTCT TTTTGGTTCG CAAGCCTATC TCAGAATGAG CTCCCAGAAC
    CACATTTCAG AGATAAGGCG AGGAGTTTGA AAGAAACATT ATGGCGGTCA
    AAGAAACACC TGATGAAGCT CAGAAGCTTG AAGAGTTCTT ATGCGTACGA
    AGAGATGCTG AAATGTGTTT AACTGGTGAA TTTTCGTCTG TTGGTTTGCC
    GTGTAAAAAC CGTTTGATCA AGGCACTTGT CTGCAGGGTG CCTGTTTTAG
    TCTAAGACGA TGAACTGACT GGTTTTTGTT TGCTCGTTTC TAAGTTGTTA
    GTGACACATA AGTTAAGTTT GCAGTTCATT CGCCAGTGTG TATTGTAACT
    TTGCAATAAG GCACCTGCTT GATAGCTTTC TTTTCATATT GTTCTTCGAC
    AAATATAAGT GATGATTATT ACCTGT

    Gene models with high sequence identity

    1. AT5G13710.2 [+] show detail - sterol methyltransferase 1
      E-value: 2e-149; Score: 266.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 4.5e-30
    Gene3D no description 0.0000067
    HMMPanther S-ADENOSYL-L-METHIONINE:DELTA24-STEROL-C-METH 3.2e-90
    HMMPanther METHYLTRANSFERASE 3.2e-90
    HMMPanther S-ADENOSYL-L-METHIONINE:DELTA24-STEROL-C-METH 9e-60
    HMMPanther METHYLTRANSFERASE 9e-60
    superfamily S-adenosyl-L-methionine-dependent methyltrans 1.8e-35
    superfamily S-adenosyl-L-methionine-dependent methyltrans 5.1e-16
    HMMPfam Methyltransferase type 11 0.000000000011
    HMMPfam Sterol methyltransferase C-terminal 3.5e-33

    See the detailed result >

    AT5G13710.2

    Model type
    Protein coding
    Short Description
    sterol methyltransferase 1
    Curator Summary
    SMT1 controls the level of cholesterol in plants
    Computational Description
    sterol methyltransferase 1 (SMT1); CONTAINS InterPro DOMAIN/s: Sterol methyltransferase C-terminal (InterPro:IPR013705), Methyltransferase type 11 (InterPro:IPR013216); BEST Arabidopsis thaliana protein match is: sterol methyltransferase 3 (TAIR:AT1G76090.1); Has 12253 Blast hits to 12250 proteins in 2286 species: Archae - 352; Bacteria - 8578; Metazoa - 91; Fungi - 457; Plants - 727; Viruses - 0; Other Eukaryotes - 2048 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR