K26438

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K26438

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K26438

Determination of introduced cDNA(s)

  • J023128A15 - Rice Full-length cDNAs - Original: J023128A15

    full reading [+] show sequence

    Nucleotide sequence: J023128A15 - full reading
    TTGGGTTGGA GGATATCATG GACAATCAAG TGATATGTAC AATCTACAAG 
    CTTCCGGATT CTCATAAGCA CATCGCTCGT CCACCTGTTG GTGTAATCAT
    ACCCAAGAAG ACTGTTGAAG CTACTGACCT GAAACCACCA CCTGTGCTAT
    GGCATGAAGA CAGTGGTAGG AGGCCTCATG ATAATAACAA CAGGAGGCCT
    TATGAAAACA GCAACAGGCA AAACCCAGCT GGAGCAATAT CTGGCCGCCA
    ACTTGGGGAA GCTGCCCACC GACTTGTGGT GAACAGCTTG AATGCTCGGA
    GTGGCGGACA ATACAATACC CCATCGATGC CATATCAAAC CATAATGAAT
    GGCATGCCTT ATCCAAATGG GATTCCACCA AGGATGGAGC AGCCTGCTCC
    TGGCTGGCAT GTTCCTGGTG ATCTACCAAA TGGTCAGGTA CCACCAGCTT
    ATGCATCATC ATCAGGTCAT TATCAGAACG ATAGGTCTGG GCCTTCTCAG
    TATGGACGAG ATAACCATGG AAGGTACCCA TATGCAAGAG ACAACCACCA
    TGATTCAAGA GGAAGGGTTC CACCATACCA TCAGAGCGGT GGAAACTCGT
    ATCAATCACA TTCTGCTCCA TCAGCAGGTC CTGGACGGTA TGCGCAACCC
    CCACCATATG CTGGGGGGTA TGGTAGGAGC TACCAGCCTG CACCGTATGG
    AGGTGGTCAG CAGTGGCAGC AGCAGCAGCA ACAACCTTAT GGCTCCTATG
    CTGGGTCAGG GCCTTATGGG GGTGGGGCAC CTCCTGCAAG GCCTAATTCA
    CGACCACAGC AGTCGCAGAA CCGTTACAAT ACCTTAGATA GGAATTCTAA
    CAGGAGACCT CCACCAGGTC ATGGGCGACA CTAAGCCCAA CCTCTGTTTG
    TTGTACCTGT GGTTTTGTTG TTAGAAAACC TGCGTACTAA AATAGAGAAC
    CTCAGCCTAG TAAAACAGAG AACCTCAGCT TAGAGATATA TATAGAGCAA
    TTTGCATAGT CTCGTGATCG ACAAGCTGTT ATAGCATCAA AGGTTCTAAG
    AGGCATGTGT TGTACAATAG AATTGTCAGT TCATCAGATA CTGGTGGCTG
    ACTGCCGTTT TTCATTTGTG GCACTCATTA TTTTAGCCCC CTAAGGTTGG
    GAATATGTTT AACAAGTTTT GTATTTTTAA GATAATAATG TTCTAGGTTA
    AATTTCAGTT TTGGTGGATA TATGTCAAAA TCTTGTATTC TTTTCTTATT
    TATAATGGAA TTGTGGTTTT CCCTC

    Gene models with high sequence identity

    1. AT1G75660.1 [+] show detail - 5'-3' exoribonuclease 3
      E-value: 7e-38; Score: 155.00

     

    InterPro Scan Digest

    See the detailed result >

    AT1G75660.1

    Model type
    Protein coding
    Short Description
    5'-3' exoribonuclease 3
    Curator Summary
    Encodes a protein with similarity to yeast 5'-3'exonucleases and can functionally complement the yeast mutations. In Arabidopsis XRN3 acts as a suppressor of posttranscriptional gene silencing. Mutants accumulate excised miRNA products suggesting that XRN3 is involved in degradation of these products.
    Computational Description
    5'-3' exoribonuclease 3 (XRN3); CONTAINS InterPro DOMAIN/s: 5'-3' exoribonuclease 2 (InterPro:IPR017151), Zinc finger, CCHC-type (InterPro:IPR001878), Putative 5-3 exonuclease (InterPro:IPR004859); BEST Arabidopsis thaliana protein match is: exoribonuclease 2 (TAIR:AT5G42540.1); Has 4264 Blast hits to 3505 proteins in 442 species: Archae - 2; Bacteria - 295; Metazoa - 1361; Fungi - 725; Plants - 751; Viruses - 31; Other Eukaryotes - 1099 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR