K26512

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K26512

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K26512

Determination of introduced cDNA(s)

  • J013046E24 - Rice Full-length cDNAs - Original: J013046E24

    full reading [+] show sequence

    Nucleotide sequence: J013046E24 - full reading
    GATTGTAATA GGCTTGTTTG CACTGCCTGT GAAGCTAGCT ACCGTAGCGA 
    TGGCTGGTGC GTTTCGTCGT TCTGCTGCCC TGCAGGCCAT GGCTGCCTTC
    TCTGTGCTTG CACTTGTTGT ACCAGATCAG GTTCAGGGGA GAGGCAAGTG
    CCCATCTTTC TCCTGCGGAC GTCTTAGCTA TGTGCATTTC CCATTCCGTC
    GTCAAGGCGA CCCCGCTGAA TGTGGTGTTC CATCATATGA GCTGACTTGT
    GCAGACAGCA ATGCTACAAT TCAGATCGAC AAGGCAACAT ACTTGGTAAC
    TGACATCAAC TACAGTGATC AGTACTTCTG GGTGGTCGAT GCAAGCTTGG
    ATTCAGCTAA CAACTGCCCT CTTCCTCGGT GGAGTCAGAC TCCTTATAAT
    GAAAACTACA GGCTTGGAGA AGATTCACAC CGCCGTGTCC AAGTCCAGTT
    GTCCCCTGAT GTGGATTGGT TCGCTACCTT TGTGAAATGC TCGCAGGAAA
    TGAATAGCAG CAATGTCATG TACAGGCCTG TGGCTTGCCG GAGCGGCAAC
    TCTTCTTTCG TCTATGTGCT AACTGGTCTG GGATCTTATT TAGCTGAGAA
    CCTTGAGCCT TCCTGTGGAT ACCTGGCAAT GACTCCTTTA GCTCTGGGTG
    GTCTAGAGAA TTGGCGAACT GCTACTGCGG CTGCGACACT GGAGGATGTA
    AATTATGAAG ATGTTGTCAG ATCCATGAGT GAAGGATTCG CTGTTCGTTT
    TCCTTTCAGG TCTGGGGGAT TCATCGACTG CCTAAGGGGC TTGATCAGCG
    ACAGTAATGG AGAACCGACA GTATATCGGA TCTTCGTCAT TGTTACTAAT
    ATCAATTCTT ACTTCTCGAT ATGCGGCCGC CATGCAACTC AACTTCCACA
    CCCTTTTGTT GTGCTCCTGA TGTTAGTGCC ACAAACTTTC TGGATTTTAA
    GGGTCATTTC TGCATGCAGG TTCGTCCTGG TGATGCTGCT GATGTGGACC
    TCCGTTGCCT ACATGTACTG GAAAATAAAG ATGAGAGTTG ATGAAGTAGA
    GAAGTTTCTG CAATTGCAAC AAATGCTGAC CCCAACGAGA TACTCCTACA
    CCGACATTAT TGCCATCACA AGTCATTACA GAGACAAGCT TGGCCAAGGA
    GGATATGGCT CCGTCTACAA AGGTGTGCTA CTCCCTGGTG ATGTCCGAGT
    TGCCATTAAG ATGCTGAAGG GTGACGCAAA TTGCAAAGGG GAAGAGTTCA
    TCAGCGAGGT CTCCACCATT GGTAGGATCC ACCATGTCAA TGTGGTGCGA
    CTCGTCGGGT TCTGCTCTGA AGAAATAAGA AGAGCGCTTG TGTACGAGTA
    TATGCCTCAG GGTTCTCTTG ACAAGTACAT CTTCTCGTCT GAAAAGAGTT
    TCTCCTGGGA TAAGCTAAAT GAAATTGCAT TGGGCATTGC CAGAGGGATC
    AACTACCTGC ATCATGGGTG TGATATGCAA ATTCTACACT TTGACATCAA
    ACCGCACAAC ATCCTTCTTG ACAACAACTT TGTCCCAAAA GTTGCCGATT
    TTGGCCTTGC AAAGCTGTAC CCAAGGGACA AGAGTTTTGT CCCAGTGAGC
    GCAGCACGAG GAACAGTGGG ATACATAGCT CCTGAGATGA TCTCTCGGGG
    TTTTGGTGCC ATATCAAGCA AGTCCGATGT TTACAGCTTC GGGATGCTAC
    TATTGGAGAT GGCCGGAGGA AGAAGGAATG CTGATCCGAA TGCGGAGAAT
    TCAAGCCAGG CATACTATCC ATCACGAGTG TACCGTCAGC TGACCCGACA
    AGAAACAGGT GAGATCACCG CTGCCGCCGA CATGCATGAG TTGGAGAAGA
    AGCTCTGCAT CGTTGGATTG TGGTGCATCC AGATGAGGTC TTGTGACCGA
    CCGATGATGA GCGAGGTGAT AGAGATGCTT GAAGGTGGTG TTGATTGTTT
    GCAAATTCCT CCTAGGCCAT TCTTCTGTGA CGATGACTAC ATCCCGGCAA
    TGGAGTCGCT GTATCTGTCC TCCGAGGTGG AGCTGGCTGC AATCTCCGAG
    GAGGAAGACG AGAGTATCAC TGAGTTGAAT TAGCTAGTAC TAGCAAGTAT
    GGTGTGTTGA TGTCTTTTCG TGAGCAGGTT GTGCTCAAGC CTGTGATGAT
    TGTAGACAGT CACACAGATG CAGTTTCTAT GCTCCTATTC CTATATTCCT
    GTAGAATGCG TATATGTGGG CTTGTACGAT TTATTATCTT GTGCTTCATC
    TGTATGAATG CATGCAAAAA TCGAGCC

    Gene models with high sequence identity

    1. AT1G66910.1 [+] show detail - Protein kinase superfamily protein
      E-value: 7e-88; Score: 322.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Serine/threonine-protein kinase-like domain 7.8e-48
    HMMPanther RECEPTOR-LIKE PROTEIN KINASE 1.2e-253
    HMMPanther SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE 1.2e-253
    Gene3D no description 1e-19
    Gene3D no description 3.1e-45
    ProfileScan Protein kinase, catalytic domain 38.506
    HMMSmart Serine/threonine-protein kinase domain 4.8e-33
    HMMSmart Tyrosine-protein kinase, catalytic domain 7.5e-28
    PatternScan Protein kinase, ATP binding site 0
    PatternScan Serine/threonine-protein kinase, active site 0
    superfamily Protein kinase-like domain 2.7e-73

    See the detailed result >

    AT1G66910.1

    Model type
    Protein coding
    Short Description
    Protein kinase superfamily protein
    Computational Description
    Protein kinase superfamily protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G66930.1); Has 113951 Blast hits to 112305 proteins in 4393 species: Archae - 178; Bacteria - 12361; Metazoa - 42729; Fungi - 9627; Plants - 32494; Viruses - 324; Other Eukaryotes - 16238 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR